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h2az1.S H2A.Z variant histone 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 397949, updated on 4-Nov-2024

Summary

Official Symbol
h2az1.S
Official Full Name
H2A.Z variant histone 1 S homeolog
Primary source
Xenbase:XB-GENE-17342536
Locus tag
XELAEV_18009423mg
See related
EnsemblRapid:ENSXLAG00005028674 AllianceGenome:Xenbase:XB-GENE-17342536
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
H2Az; H2A.z; h2afz; H2A.Z1
Summary
Orthologous to human H2AZ1 (H2A.Z variant histone 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See h2az1.S in Genome Data Viewer
Location:
chromosome: 1S
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (63080566..63084660)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (62624297..62628513)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (77594461..77622440)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene DNA damage inducible transcript 4 like S homeolog Neighboring gene alcohol dehydrogenase 1C (class I), gamma polypeptide S homeolog Neighboring gene DnaJ heat shock protein family (Hsp40) member B14 S homeolog Neighboring gene microsomal triglyceride transfer protein, gene 1 S homeolog

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001088140.2NP_001081609.1  variant histone H2A.Zl1

    See identical proteins and their annotated locations for NP_001081609.1

    Status: VALIDATED

    Source sequence(s)
    DC128510
    UniProtKB/Swiss-Prot
    O13272, O13273, P70094
    UniProtKB/TrEMBL
    A0A974DTH2, Q5HZZ9
    Related
    ENSXLAP00005085415.1, ENSXLAT00005087077.1
    Conserved Domains (1) summary
    PLN00154
    Location:6121
    PLN00154; histone H2A; Provisional

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    63080566..63084660
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)