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adrm1.S ADRM1 26S proteasome ubiquitin receptor S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 397797, updated on 18-Sep-2024

Summary

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Official Symbol
adrm1.S
Official Full Name
ADRM1 26S proteasome ubiquitin receptor S homeolog
Primary source
Xenbase:XB-GENE-6252580
Locus tag
XELAEV_18046232mg
See related
EnsemblRapid:ENSXLAG00005031525
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
xoom; arm-1; gp110; rpn13; adrm1-a; adrm1-b
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Genomic context

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See adrm1.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (13516933..13530984, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (13415860..13429938, complement)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S21 S homeolog Neighboring gene laminin subunit alpha 5 S homeolog Neighboring gene oxysterol binding protein like 2 S homeolog Neighboring gene histamine receptor H3 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Xoom is maternally stored and functions as a transmembrane protein for gastrulation movement in Xenopus embryos. Hasegawa K, et al. Dev Growth Differ, 2001 Feb. PMID 11148449
  2. Xoom is required for epibolic movement of animal ectodermal cells in Xenopus laevis gastrulation. Hasegawa K, et al. Dev Growth Differ, 2000 Aug. PMID 10969733
  3. Xoom: a novel oocyte membrane protein maternally expressed and involved in the gastrulation movement of Xenopus embryos. Hasegawa K, et al. Int J Dev Biol, 1999 Sep. PMID 10610020
  4. Two distinct modes of DNMT1 recruitment ensure stable maintenance DNA methylation. Nishiyama A, et al. Nat Commun, 2020 Mar 6. PMID 32144273, Free PMC Article
  5. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables endopeptidase activator activity IEA
Inferred from Electronic Annotation
more info
  
enables proteasome binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of proteasome complex IEA
Inferred from Electronic Annotation
more info
  
part_of proteasome regulatory particle, lid subcomplex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
proteasomal ubiquitin receptor ADRM1-A
Names
Protein ADRM1-A
adhesion regulating molecule 1 S homeolog
oocyte membrane protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001087898.2 → NP_001081367.1  proteasomal ubiquitin receptor ADRM1-A

    See identical proteins and their annotated locations for NP_001081367.1

    Status: PROVISIONAL

    Source sequence(s)
    AB026995
    UniProtKB/Swiss-Prot
    Q05AY8, Q6GN67, Q9PVQ2
    UniProtKB/TrEMBL
    A0A974H0P9
    Related
    ENSXLAP00005094493.1, ENSXLAT00005096196.1
    Conserved Domains (2) summary
    cd13314
    Location:23 → 127
    PH_Rpn13; Pleckstrin homology-like domain of Regulatory Particle Non-ATPase 13
    pfam16550
    Location:273 → 380
    RPN13_C; UCH-binding domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    13516933..13530984 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6GN67.2 GenPept UniProtKB/Swiss-Prot:Q6GN67

Gene LinkOut

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Molecular Biology Databases
Research Materials