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col2a1.S collagen, type II, alpha 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 397739, updated on 17-Aug-2024

Summary

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Official Symbol
col2a1.S
Official Full Name
collagen, type II, alpha 1 S homeolog
Primary source
Xenbase:XB-GENE-6252612
Locus tag
XELAEV_18015990mg
See related
EnsemblRapid:ENSXLAG00005024957
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
col11a3; col2a1b; xcol2a1; col2a1-a; col2a1-b
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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Location:
chromosome: 2S
Exon count:
55
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (135276454..135322667)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (126270761..126317021)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor-like 11 like gene1 S homeolog Neighboring gene general transcription factor IIH subunit 4 S homeolog Neighboring gene vitamin D receptor S homeolog Neighboring gene histone deacetylase 7 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression of two nonallelic type II procollagen genes during Xenopus laevis embryogenesis is characterized by stage-specific production of alternatively spliced transcripts. Su MW, et al. J Cell Biol, 1991 Oct. PMID 1918153, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
  
enables extracellular matrix structural constituent conferring tensile strength IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
  
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
collagen, type II, alpha 1 S homeolog
Names
X-col II
alpha-1 type II' collagen

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001087791.1 → NP_001081260.1  collagen, type II, alpha 1 S homeolog precursor

    See identical proteins and their annotated locations for NP_001081260.1

    Status: PROVISIONAL

    Source sequence(s)
    M63596
    UniProtKB/TrEMBL
    Q91718
    Related
    ENSXLAP00005074027.1, ENSXLAT00005075596.1
    Conserved Domains (3) summary
    pfam01391
    Location:479 → 538
    Collagen; Collagen triple helix repeat (20 copies)
    pfam00093
    Location:38 → 93
    VWC; von Willebrand factor type C domain
    pfam01410
    Location:1258 → 1490
    COLFI; Fibrillar collagen C-terminal domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    135276454..135322667
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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