col2a1.L collagen, type II, alpha 1 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: col2a1.L
Official Full Name: collagen, type II, alpha 1 L homeolog
Primary source: Xenbase:XB-GENE-6252613
Locus tag: XELAEV_18013523mg
See related: EnsemblRapid:ENSXLAG00005005189
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: col2a1; col11a3; col2a1a; xcol2a1; col2a1-a; col2a1-b
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Genomic context

Location:: chromosome: 2L

Exon count:: 54

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	2L	NC_054373.1 (151436730..151485461)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	2L	NC_030726.1 (145563002..145611847)

Chromosome 2L - NC_054373.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables extracellular matrix structural constituent	IEA Inferred from Electronic Annotation more info
enables extracellular matrix structural constituent conferring tensile strength	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within extracellular matrix organization	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of collagen trimer	IEA Inferred from Electronic Annotation more info
located_in collagen-containing extracellular matrix	IEA Inferred from Electronic Annotation more info
located_in extracellular region	IEA Inferred from Electronic Annotation more info
located_in extracellular space	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: collagen alpha-1(II) chain

Names: X-col II; alpha-1 type II collagen

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001087789.1 → NP_001081258.1 collagen alpha-1(II) chain precursor

See identical proteins and their annotated locations for NP_001081258.1

Status: PROVISIONAL

Source sequence(s)

BC111515

UniProtKB/Swiss-Prot

Q7ZTI6, Q91717

UniProtKB/TrEMBL

A0A974DPQ7

Related

ENSXLAP00005015325.1, ENSXLAT00005015606.1

Conserved Domains (3) summary

pfam01391
Location:476 → 535

Collagen; Collagen triple helix repeat (20 copies)

smart00214
Location:38 → 93

VWC; von Willebrand factor (vWF) type C domain

pfam01410
Location:1253 → 1485

COLFI; Fibrillar collagen C-terminal domain