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XPO1 exportin 1 [ Sus scrofa (pig) ]

Gene ID: 397330, updated on 17-Aug-2024

Summary

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Official Symbol
XPO1provided by VGNC
Official Full Name
exportin 1provided by VGNC
Primary source
VGNC:VGNC:95003
See related
Ensembl:ENSSSCG00000028228
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 20.6), ovary (RPKM 17.8) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See XPO1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
27
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (80255016..80300260)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (84163542..84182141)

Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106509807 Neighboring gene uncharacterized LOC106509808 Neighboring gene spermatogenesis-associated serine-rich protein 2 pseudogene Neighboring gene uncharacterized LOC102166164 Neighboring gene ubiquitin specific peptidase 34 Neighboring gene activator of HSP90 ATPase homolog 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Effects of exportin 1 on nuclear transport and meiotic resumption in porcine full-grown and growing oocytes. Onuma A, et al. Biol Reprod, 2018 Apr 1. PMID 29228114
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear export signal receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosomal large subunit export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosomal small subunit export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exportin-1
Names
exportin 1 (CRM1 homolog, yeast)
nuclear export factor CRM1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

    Range
    80255016..80300260
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021087484.1 → XP_020943143.1  exportin-1 isoform X1

    UniProtKB/TrEMBL
    A0A218PI30, A0A286ZTK1, A0A4X1W5Y2, A0A4X1WBE0, A0A8D0RRH6
    Related
    ENSSSCP00000034800.1, ENSSSCT00000049858.2
    Conserved Domains (1) summary
    cl26694
    Location:15 → 1044
    Xpo1; Exportin 1-like protein

  2. XM_021087485.1 → XP_020943144.1  exportin-1 isoform X2

    UniProtKB/TrEMBL
    A0A287BHC9
    Related
    ENSSSCP00000055765.3, ENSSSCT00000065655.3
    Conserved Domains (1) summary
    cl26694
    Location:40 → 1008
    Xpo1; Exportin 1-like protein

  3. XM_021087486.1 → XP_020943145.1  exportin-1 isoform X3

    UniProtKB/TrEMBL
    A0A287AN65, A0A8D0NJZ5, A0A8D1AMR9
    Conserved Domains (1) summary
    cl26694
    Location:1 → 913
    Xpo1; Exportin 1-like protein

  4. XM_021087488.1 → XP_020943147.1  exportin-1 isoform X3

    UniProtKB/TrEMBL
    A0A287AN65, A0A8D0NJZ5, A0A8D1AMR9
    Conserved Domains (1) summary
    cl26694
    Location:1 → 913
    Xpo1; Exportin 1-like protein

  5. XM_013996110.2 → XP_013851564.2  exportin-1 isoform X3

    UniProtKB/TrEMBL
    A0A287AN65, A0A8D0NJZ5, A0A8D1AMR9
    Conserved Domains (1) summary
    cl26694
    Location:1 → 913
    Xpo1; Exportin 1-like protein

  6. XM_021087487.1 → XP_020943146.1  exportin-1 isoform X3

    UniProtKB/TrEMBL
    A0A287AN65, A0A8D0NJZ5, A0A8D1AMR9
    Related
    ENSSSCP00000045442.2, ENSSSCT00000038585.3
    Conserved Domains (1) summary
    cl26694
    Location:1 → 913
    Xpo1; Exportin 1-like protein
Nucleotide Protein
Heading Accession and Version

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