U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

FCN1 ficolin (collagen/fibrinogen domain containing) 1 [ Sus scrofa (pig) ]

Gene ID: 397316, updated on 16-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
FCN1
Gene description
ficolin (collagen/fibrinogen domain containing) 1
See related
Ensembl:ENSSSCG00000029414
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
FCNB
Expression
Biased expression in subcutaneous adipose (RPKM 33.2), lung (RPKM 31.9) and 3 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (274125666..274132917, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (308216807..308224034, complement)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene collagen type V alpha 1 chain Neighboring gene uncharacterized LOC110256570 Neighboring gene ficolin (collagen/fibrinogen domain containing lectin) 2 (hucolin) Neighboring gene uncharacterized LOC106507691 Neighboring gene olfactomedin 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Molecular cloning and characterization of ficolin, a multimeric protein with fibrinogen- and collagen-like domains. Ichijo H, et al. J Biol Chem, 1993 Jul 5. PMID 7686157
  2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ficolin-1
Names
ficolin B
ficolin-A
ficolin-alpha

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_214160.2 → NP_999325.1  ficolin-1 precursor

    See identical proteins and their annotated locations for NP_999325.1

    Status: PROVISIONAL

    Source sequence(s)
    L12345
    UniProtKB/Swiss-Prot
    Q29042
    UniProtKB/TrEMBL
    A0A480TCK1
    Related
    ENSSSCP00000046708.2, ENSSSCT00000060706.3
    Conserved Domains (2) summary
    pfam01391
    Location:52 → 106
    Collagen; Collagen triple helix repeat (20 copies)
    cd00087
    Location:115 → 324
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    274125666..274132917 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021082870.1 → XP_020938529.1  ficolin-1 isoform X3

    Conserved Domains (2) summary
    pfam01391
    Location:50 → 105
    Collagen; Collagen triple helix repeat (20 copies)
    cd00087
    Location:115 → 249
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...

  2. XM_021082862.1 → XP_020938521.1  ficolin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8D0RXB5
    Related
    ENSSSCP00000065871.2, ENSSSCT00000086207.2
    Conserved Domains (1) summary
    cd00087
    Location:189 → 400
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...

  3. XM_013988963.2 → XP_013844417.1  ficolin-1 isoform X2

    UniProtKB/TrEMBL
    A0A287AS68
    Conserved Domains (2) summary
    pfam01391
    Location:34 → 69
    Collagen; Collagen triple helix repeat (20 copies)
    cd00087
    Location:77 → 286
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...

RNA

  1. XR_002341444.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q29042.1 GenPept UniProtKB/Swiss-Prot:Q29042

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.