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CKM creatine kinase, M-type [ Sus scrofa (pig) ]

Gene ID: 397264, updated on 17-Aug-2024

Summary

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Official Symbol
CKMprovided by VGNC
Official Full Name
creatine kinase, M-typeprovided by VGNC
Primary source
VGNC:VGNC:96952
See related
Ensembl:ENSSSCG00000036132
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
CPK-M
Expression
Biased expression in longissimus dorsi muscle (RPKM 10195.4), psoas major muscle (RPKM 7732.3) and 2 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CKM in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (51704021..51716935, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) Unplaced Scaffold NW_003541195.1 (10462..20834)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene exocyst complex component 3 like 2 Neighboring gene microtubule affinity regulating kinase 4 Neighboring gene kinesin light chain 3 Neighboring gene ERCC excision repair 2, TFIIH core complex helicase subunit Neighboring gene protein phosphatase 1 regulatory subunit 13 like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. 31P NMR 2D Mapping of Creatine Kinase Forward Flux Rate in Hearts with Postinfarction Left Ventricular Remodeling in Response to Cell Therapy. Gao L, et al. PLoS One, 2016. PMID 27606901, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. this study examined the heterogeneity of creatine kinase (CK) forward flux rate of hearts with postinfarction left ventricular (LV) remodeling.
    Title: 31P NMR 2D Mapping of Creatine Kinase Forward Flux Rate in Hearts with Postinfarction Left Ventricular Remodeling in Response to Cell Therapy.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables creatine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphocreatine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
creatine kinase M-type
Names
M-CK
creatine kinase M chain
creatine phosphokinase M-type
muscle creatine kinase
NP_001123421.1
XP_020949200.1
XP_020949201.1
XP_020949202.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001129949.1 → NP_001123421.1  creatine kinase M-type

    See identical proteins and their annotated locations for NP_001123421.1

    Status: PROVISIONAL

    Source sequence(s)
    AY754869
    UniProtKB/Swiss-Prot
    Q45EW9, Q5XLD3
    UniProtKB/TrEMBL
    A0A5G2QZN6
    Related
    ENSSSCP00000061534.2, ENSSSCT00000075869.2
    Conserved Domains (1) summary
    cd00716
    Location:16 → 373
    creatine_kinase_like; Phosphagen (guanidino) kinases such as creatine kinase and similar enzymes

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    51704021..51716935 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021093542.1 → XP_020949201.1  creatine kinase M-type isoform X1

    UniProtKB/TrEMBL
    A0A5G2QZN6
    Conserved Domains (1) summary
    cd00716
    Location:1 → 304
    creatine_kinase_like; Phosphagen (guanidino) kinases such as creatine kinase and similar enzymes

  2. XM_021093541.1 → XP_020949200.1  creatine kinase M-type isoform X1

    UniProtKB/TrEMBL
    A0A5G2QZN6
    Conserved Domains (1) summary
    cd00716
    Location:1 → 304
    creatine_kinase_like; Phosphagen (guanidino) kinases such as creatine kinase and similar enzymes

  3. XM_021093543.1 → XP_020949202.1  creatine kinase M-type isoform X1

    UniProtKB/TrEMBL
    A0A5G2QZN6
    Related
    ENSSSCP00000070358.1, ENSSSCT00000087584.1
    Conserved Domains (1) summary
    cd00716
    Location:1 → 304
    creatine_kinase_like; Phosphagen (guanidino) kinases such as creatine kinase and similar enzymes
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5XLD3.1 GenPept UniProtKB/Swiss-Prot:Q5XLD3

Gene LinkOut

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