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SUMO2 small ubiquitin like modifier 2 [ Sus scrofa (pig) ]

Gene ID: 397044, updated on 5-Mar-2024

Summary

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Gene symbol
SUMO2
Gene description
small ubiquitin like modifier 2
See related
Ensembl:ENSSSCG00000017212
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
PSMT3; Smt3A; SMT3H2
Annotation information
Annotation category: partial on reference assembly
Expression
Ubiquitous expression in ovary (RPKM 247.4), spleen (RPKM 220.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See SUMO2 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
4
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (6116694..6130089)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (6079142..6092538)

Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene MIF4G domain containing Neighboring gene mitochondrial ribosomal protein S7 Neighboring gene golgi associated, gamma adaptin ear containing, ARF binding protein 3 Neighboring gene DNA-directed RNA polymerases I, II, and III subunit RPABC4 pseudogene Neighboring gene nucleoporin 85 Neighboring gene Jupiter microtubule associated homolog 1 Neighboring gene armadillo repeat containing 7 Neighboring gene 5', 3'-nucleotidase, cytosolic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Molecular cloning and expression analysis of the pig small ubiquitin-like modifier (SUMO) gene family. Lee JY, et al. Int J Immunogenet, 2009 Feb. PMID 19207937
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tag activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-like protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein sumoylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small ubiquitin-related modifier 2
Names
MIF2 suppressor
SMT3 homolog 2
SMT3 suppressor of mif two 3 homolog 2
SUMO-2
sentrin-2
ubiquitin-like protein SMT3A
ubiquitin-like protein SMT3B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213984.1 → NP_999149.1  small ubiquitin-related modifier 2

    See identical proteins and their annotated locations for NP_999149.1

    Status: PROVISIONAL

    Source sequence(s)
    L77617
    UniProtKB/Swiss-Prot
    A7WLH9, P61958
    UniProtKB/TrEMBL
    A0A5G2QJK4, A0A8D0M2H9, A0A8D1JI91, C7S2Z6
    Related
    ENSSSCP00000018235.2, ENSSSCT00000018737.5
    Conserved Domains (1) summary
    cd16115
    Location:17 → 88
    Ubl_SUMO2_3_4; ubiquitin-like (Ubl) domain found in small ubiquitin-related modifier SUMO-2, SUMO-3, SUMO-4, and similar proteins

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

    Range
    6116694..6130089
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P61958.1 GenPept UniProtKB/Swiss-Prot:P61958

Gene LinkOut

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