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LGALS4 galectin 4 [ Sus scrofa (pig) ]

Gene ID: 397041, updated on 5-Mar-2024

Summary

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Official Symbol
LGALS4provided by VGNC
Official Full Name
galectin 4provided by VGNC
Primary source
VGNC:VGNC:89696
See related
Ensembl:ENSSSCG00000022017
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
L36LBP
Expression
Low expression observed in reference dataset See more
Orthologs
human mouse all
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Genomic context

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See LGALS4 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (47616984..47625435, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (43233204..43240263, complement)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene galectin 7 Neighboring gene galectin-7-like Neighboring gene enoyl-CoA hydratase 1 Neighboring gene heterogeneous nuclear ribonucleoprotein L

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. An adherens junction protein is a member of the family of lactose-binding lectins. Chiu ML, et al. J Biol Chem, 1994 Dec 16. PMID 7989350
  2. A high resolution physical and RH map of pig chromosome 6q1.2 and comparative analysis with human chromosome 19q13.1. Martins-Wess F, et al. BMC Genomics, 2003 May 13. PMID 12744726, Free PMC Article
  3. Evaluation and characterization of a porcine small intestine cDNA library: analysis of 839 clones. Wintero AK, et al. Mamm Genome, 1996 Jul. PMID 8672129
  4. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  5. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galectin-4
Names
L-36 lactose binding protein
gal-4
lactose-binding lectin 4
lectin, galactoside-binding, soluble, 4 (galectin 4)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213981.1 → NP_999146.1  galectin-4

    See identical proteins and their annotated locations for NP_999146.1

    Status: PROVISIONAL

    Source sequence(s)
    X79303
    UniProtKB/Swiss-Prot
    Q29058, Q29296
    UniProtKB/TrEMBL
    A0A480Q4E1, A0A4X1T3D0
    Related
    ENSSSCP00000023342.2, ENSSSCT00000027266.4
    Conserved Domains (2) summary
    cd00070
    Location:193 → 322
    GLECT; Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may ...
    pfam00337
    Location:18 → 149
    Gal-bind_lectin; Galactoside-binding lectin

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    47616984..47625435 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q29058.1 GenPept UniProtKB/Swiss-Prot:Q29058

Gene LinkOut

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Molecular Biology Databases
Research Materials