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HADHB hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta [ Sus scrofa (pig) ]

Gene ID: 397017, updated on 5-Mar-2024

Summary

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Official Symbol
HADHBprovided by VGNC
Official Full Name
hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit betaprovided by VGNC
Primary source
VGNC:VGNC:103961
See related
Ensembl:ENSSSCG00000008569
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
LCTHIO
Expression
Broad expression in heart (RPKM 388.3), psoas major muscle (RPKM 280.8) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See HADHB in Genome Data Viewer
Location:
chromosome: 3
Exon count:
16
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (112712894..112753121, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (119651210..119676200, complement)

Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene selenoprotein I Neighboring gene adhesion G protein-coupled receptor F3 Neighboring gene non-histone chromosomal protein HMG-14 pseudogene Neighboring gene hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha Neighboring gene GRB2 associated regulator of MAPK1 subtype 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acyltransferase activity, transferring groups other than amino-acyl groups IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid beta-oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trifunctional enzyme subunit beta, mitochondrial
Names
hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit
long-chain 3-ketoacyl-CoA thiolase
NP_001335901.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001348972.1 → NP_001335901.1  trifunctional enzyme subunit beta, mitochondrial

    Status: VALIDATED

    Source sequence(s)
    AEMK02000021, AK400872, BW959801
    UniProtKB/TrEMBL
    A0A287BPJ7, A0A4X1TSN2, A0A4X1TVF4, A0A5G2QPP5, A0A8D1GL44
    Related
    ENSSSCP00000058542.1, ENSSSCT00000042800.2
    Conserved Domains (1) summary
    cd00751
    Location:56 → 472
    thiolase; Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and ...

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

    Range
    112712894..112753121 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_213966.1: Suppressed sequence

    Description
    NM_213966.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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