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POLR2B RNA polymerase II subunit B [ Sus scrofa (pig) ]

Gene ID: 397001, updated on 17-Aug-2024

Summary

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Official Symbol
POLR2Bprovided by VGNC
Official Full Name
RNA polymerase II subunit Bprovided by VGNC
Primary source
VGNC:VGNC:91647
See related
Ensembl:ENSSSCG00000022955
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
RpB2
Expression
Ubiquitous expression in kidney (RPKM 89.0), ovary (RPKM 73.5) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See POLR2B in Genome Data Viewer
Location:
chromosome: 8
Exon count:
25
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 8 NC_010450.4 (56232730..56283367)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 8 NC_010450.3 (59014262..59064755)

Chromosome 8 - NC_010450.4Genomic Context describing neighboring genes Neighboring gene RE1-silencing transcription factor-like Neighboring gene uncharacterized LOC110262108 Neighboring gene nitric oxide-associated protein 1-like Neighboring gene M-phase-specific PLK1-interacting protein-like Neighboring gene insulin like growth factor binding protein 7 Neighboring gene uncharacterized LOC110262010 Neighboring gene uncharacterized LOC110262009

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribonucleoside binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase II subunit RPB2
Names
DNA-directed RNA polymerase II polypeptide B
polymerase (RNA) II (DNA directed) polypeptide B, 140kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010450.4 Reference Sscrofa11.1 Primary Assembly

    Range
    56232730..56283367
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003129037.5 → XP_003129085.4  DNA-directed RNA polymerase II subunit RPB2

    UniProtKB/TrEMBL
    A0A0B8RVL1, A0A8D0KHK3
    Related
    ENSSSCP00000023238.3, ENSSSCT00000023257.4
    Conserved Domains (1) summary
    PRK08565
    Location:27 → 1172
    PRK08565; DNA-directed RNA polymerase subunit B; Provisional
Nucleotide Protein Strain
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