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GALNS galactosamine (N-acetyl)-6-sulfatase [ Sus scrofa (pig) ]

Gene ID: 397000, updated on 17-Aug-2024

Summary

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Official Symbol
GALNSprovided by VGNC
Official Full Name
galactosamine (N-acetyl)-6-sulfataseprovided by VGNC
Primary source
VGNC:VGNC:97061
See related
Ensembl:ENSSSCG00000002645
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in spleen (RPKM 18.5), lung (RPKM 18.0) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See GALNS in Genome Data Viewer
Location:
chromosome: 6
Exon count:
16
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (869284..890137)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (1093151..1098277, complement)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene PABPN1 like, cytoplasmic Neighboring gene trafficking protein particle complex subunit 2L Neighboring gene adenine phosphoribosyltransferase Neighboring gene chromatin licensing and DNA replication factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Porcine N-acetylgalactosamine 6-sulfatase (GALNS) cDNA sequence and expression in developing teeth. Yamakoshi Y, et al. Connect Tissue Res, 2002. PMID 12489154
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylgalactosamine-6-sulfatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables arylsulfatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetylgalactosamine-6-sulfatase
Names
N-acetylgalactosamine-6-sulfate sulfatase
chondroitinase
chondroitinsulfatase
galNAc6S sulfatase
galactosamine (N-acetyl)-6-sulfate sulfatase (Morquio syndrome, mucopolysaccharidosis type IVA)
galactose-6-sulfate sulfatase
NP_999120.1
XP_020949159.1
XP_020949160.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213955.1 → NP_999120.1  N-acetylgalactosamine-6-sulfatase precursor

    See identical proteins and their annotated locations for NP_999120.1

    Status: PROVISIONAL

    Source sequence(s)
    AF322917
    UniProtKB/Swiss-Prot
    Q8WNQ7
    UniProtKB/TrEMBL
    A0A4X1TE77
    Related
    ENSSSCP00000002856.4, ENSSSCT00000002935.5
    Conserved Domains (2) summary
    COG3119
    Location:30 → 483
    AslA; Arylsulfatase A or related enzyme [Inorganic ion transport and metabolism]
    cd16157
    Location:29 → 494
    GALNS; galactosamine-6-sulfatase; also known as N-acetylgalactosamine-6-sulfatase (GALNS)

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    869284..890137
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021093501.1 → XP_020949160.1  N-acetylgalactosamine-6-sulfatase isoform X1

    UniProtKB/TrEMBL
    A0A4X1TE77
    Conserved Domains (1) summary
    cd16157
    Location:1 → 455
    GALNS; galactosamine-6-sulfatase; also known as N-acetylgalactosamine-6-sulfatase (GALNS)

  2. XM_021093500.1 → XP_020949159.1  N-acetylgalactosamine-6-sulfatase isoform X1

    UniProtKB/TrEMBL
    A0A4X1TE77
    Conserved Domains (1) summary
    cd16157
    Location:1 → 455
    GALNS; galactosamine-6-sulfatase; also known as N-acetylgalactosamine-6-sulfatase (GALNS)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8WNQ7.1 GenPept UniProtKB/Swiss-Prot:Q8WNQ7

Gene LinkOut

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