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CRYL1 crystallin lambda 1 [ Sus scrofa (pig) ]

Gene ID: 396914, updated on 17-Aug-2024

Summary

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Official Symbol
CRYL1provided by VGNC
Official Full Name
crystallin lambda 1provided by VGNC
Primary source
VGNC:VGNC:87023
See related
Ensembl:ENSSSCG00000009268
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
CRY; GulDH
Expression
Biased expression in kidney (RPKM 344.1) and mixtures (RPKM 68.6) See more
Orthologs
human mouse all
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Genomic context

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See CRYL1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
11
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 11 NC_010453.5 (845471..925849, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 11 NC_010453.4 (5725..138292, complement)

Chromosome 11 - NC_010453.5Genomic Context describing neighboring genes Neighboring gene gap junction protein beta 2 Neighboring gene gap junction protein beta 6 Neighboring gene uncharacterized LOC110255788 Neighboring gene intraflagellar transport 88

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Human CRYL1, a novel enzyme-crystallin overexpressed in liver and kidney and downregulated in 58% of liver cancer tissues from 60 Chinese patients, and four new homologs from other mammalians. Chen J, et al. Gene, 2003 Jan 2. PMID 12527201
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-gulonate 3-dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables NAD+ binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lambda-crystallin homolog
Names
L-gulonate 3-dehydrogenase
gul3DH
NP_999046.1
XP_020920812.1
XP_020920813.1
XP_020920814.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213881.1 → NP_999046.1  lambda-crystallin homolog

    See identical proteins and their annotated locations for NP_999046.1

    Status: PROVISIONAL

    Source sequence(s)
    AF351608
    UniProtKB/Swiss-Prot
    Q8SQ26
    UniProtKB/TrEMBL
    A0A480UEN9
    Related
    ENSSSCP00000044837.1, ENSSSCT00000040906.3
    Conserved Domains (3) summary
    PRK06129
    Location:12 → 316
    PRK06129; 3-hydroxyacyl-CoA dehydrogenase; Validated
    pfam00725
    Location:195 → 264
    3HCDH; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
    pfam02737
    Location:12 → 189
    3HCDH_N; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010453.5 Reference Sscrofa11.1 Primary Assembly

    Range
    845471..925849 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021065155.1 → XP_020920814.1  lambda-crystallin homolog isoform X2

    UniProtKB/TrEMBL
    A0A480YDF6, A0A4X1TXY9, A0A8D0IUW1, A0A8D0U5I1
    Related
    ENSSSCP00000052211.1, ENSSSCT00000056644.3
    Conserved Domains (1) summary
    cl27647
    Location:2 → 291
    3HCDH; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

  2. XM_021065153.1 → XP_020920812.1  lambda-crystallin homolog isoform X1

    UniProtKB/TrEMBL
    A0A480V6E6, A0A480Y1R5, A0A8D0WRI3, A0A8D1CNP6, F1RVB1
    Related
    ENSSSCP00000009883.3, ENSSSCT00000010149.4
    Conserved Domains (1) summary
    cl27647
    Location:79 → 324
    3HCDH; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

  3. XM_021065154.1 → XP_020920813.1  lambda-crystallin homolog isoform X2

    UniProtKB/TrEMBL
    A0A480YDF6, A0A4X1TXY9, A0A8D0IUW1, A0A8D0U5I1
    Conserved Domains (1) summary
    cl27647
    Location:2 → 291
    3HCDH; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8SQ26.3 GenPept UniProtKB/Swiss-Prot:Q8SQ26

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