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ST3GAL4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 [ Sus scrofa (pig) ]

Gene ID: 396602, updated on 17-Aug-2024

Summary

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Official Symbol
ST3GAL4provided by VGNC
Official Full Name
ST3 beta-galactoside alpha-2,3-sialyltransferase 4provided by VGNC
Primary source
VGNC:VGNC:93504
See related
Ensembl:ENSSSCG00000015232
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
ST3GAL-IV
Expression
Ubiquitous expression in lung (RPKM 4.4), spleen (RPKM 3.7) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See ST3GAL4 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
16
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 9 NC_010451.4 (53442795..53491847)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 9 NC_010451.3 (59294217..59323671)

Chromosome 9 - NC_010451.4Genomic Context describing neighboring genes Neighboring gene TIR domain containing adaptor protein Neighboring gene decapping enzyme, scavenger Neighboring gene kirre like nephrin family adhesion molecule 3 Neighboring gene uncharacterized LOC110262291

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. The animal sialyltransferases and sialyltransferase-related genes: a phylogenetic approach. Harduin-Lepers A, et al. Glycobiology, 2005 Aug. PMID 15843597
  2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4
Names
alpha2,3-sialyltransferase
NP_998922.1
XP_005667554.2
XP_020957808.1
XP_020957810.1
XP_020957811.1
XP_020957812.1
XP_020957813.1
XP_020957814.1
XP_020957815.1
XP_020957816.1
XP_020957817.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213757.1 → NP_998922.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4

    See identical proteins and their annotated locations for NP_998922.1

    Status: PROVISIONAL

    Source sequence(s)
    AJ584674
    UniProtKB/TrEMBL
    A0A287B479, A0A8D0ZP71, Q70E75
    Related
    ENSSSCP00000051230.3, ENSSSCT00000045552.3
    Conserved Domains (1) summary
    pfam00777
    Location:84 → 331
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010451.4 Reference Sscrofa11.1 Primary Assembly

    Range
    53442795..53491847
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021102153.1 → XP_020957812.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X3

    UniProtKB/TrEMBL
    A0A8D0HVT1, A0A8D1FA49, A0A8D1YWP8
    Conserved Domains (1) summary
    pfam00777
    Location:141 → 385
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  2. XM_021102151.1 → XP_020957810.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X2

    UniProtKB/TrEMBL
    A0A4X1VHC2, A0A8D0P0X2, A0A8D1C712, F1S6H2
    Related
    ENSSSCP00000016153.3, ENSSSCT00000016598.5
    Conserved Domains (1) summary
    pfam00777
    Location:147 → 391
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  3. XM_005667497.3 → XP_005667554.2  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X6

    UniProtKB/TrEMBL
    A0A287B479, A0A4X1VHC9, A0A8D0ZP71, B2ZCZ8
    Conserved Domains (1) summary
    pfam00777
    Location:87 → 331
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  4. XM_021102157.1 → XP_020957816.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X6

    UniProtKB/TrEMBL
    A0A287B479, A0A4X1VHC9, A0A8D0ZP71, B2ZCZ8
    Conserved Domains (1) summary
    pfam00777
    Location:87 → 331
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  5. XM_021102156.1 → XP_020957815.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X6

    UniProtKB/TrEMBL
    A0A287B479, A0A4X1VHC9, A0A8D0ZP71, B2ZCZ8
    Related
    ENSSSCP00000064206.1, ENSSSCT00000076842.1
    Conserved Domains (1) summary
    pfam00777
    Location:87 → 331
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  6. XM_021102152.1 → XP_020957811.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X2

    UniProtKB/TrEMBL
    A0A4X1VHC2, A0A8D0P0X2, A0A8D1C712, F1S6H2
    Conserved Domains (1) summary
    pfam00777
    Location:147 → 391
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  7. XM_021102155.1 → XP_020957814.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X5

    UniProtKB/TrEMBL
    A0A8D0P0X2
    Conserved Domains (1) summary
    pfam00777
    Location:147 → 343
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  8. XM_021102149.1 → XP_020957808.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X1

    UniProtKB/TrEMBL
    A0A287BC08, A0A8D0R4Y0, A0A8D0ZT53, A0A8D1FA49, A0A8D1YWP8
    Related
    ENSSSCP00000053648.2, ENSSSCT00000041454.3
    Conserved Domains (1) summary
    pfam00777
    Location:122 → 366
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  9. XM_021102154.1 → XP_020957813.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X4

    UniProtKB/TrEMBL
    A0A8D1FA49, A0A8D1YWP8
    Conserved Domains (1) summary
    pfam00777
    Location:122 → 318
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  10. XM_021102158.1 → XP_020957817.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4 isoform X6

    UniProtKB/TrEMBL
    A0A287B479, A0A4X1VHC9, A0A8D0ZP71, B2ZCZ8
    Conserved Domains (1) summary
    pfam00777
    Location:87 → 331
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
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