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TREM1 triggering receptor expressed on myeloid cells 1 [ Sus scrofa (pig) ]

Gene ID: 396601, updated on 17-Aug-2024

Summary

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Official Symbol
TREM1provided by VGNC
Official Full Name
triggering receptor expressed on myeloid cells 1provided by VGNC
Primary source
VGNC:VGNC:94383
See related
Ensembl:ENSSSCG00000033251
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
TREM-1
Expression
Biased expression in lung (RPKM 4.5), spleen (RPKM 2.8) and 3 other tissues See more
Orthologs
human mouse all
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Genomic context

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See TREM1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
4
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (36510253..36531796, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (41804122..41825672, complement)

Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110261526 Neighboring gene triggering receptor expressed on myeloid cells 2 Neighboring gene triggering receptor expressed on myeloid cells like 2 Neighboring gene natural cytotoxicity triggering receptor 2 Neighboring gene uncharacterized LOC106504408

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Cloning of porcine triggering receptor expressed on myeloid cells-1 (TREM-1) and its induction by lipopolysaccharide, peptidoglycan, and Salmonella enterica serovar Typhimurium infection. Ramanathan B, et al. Dev Comp Immunol, 2005. PMID 15325519
  2. Characterization of bovine cDNA encoding triggering receptor expressed on myeloid cells 1 (TREM-1). Ramanathan B, et al. Vet Immunol Immunopathol, 2004 Nov. PMID 15451618
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in chemokine production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytokine production involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neutrophil chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neutrophil-mediated killing of gram-negative bacterium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
triggering receptor expressed on myeloid cells 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213756.1 → NP_998921.1  triggering receptor expressed on myeloid cells 1 precursor

    See identical proteins and their annotated locations for NP_998921.1

    Status: PROVISIONAL

    Source sequence(s)
    AY382476
    UniProtKB/Swiss-Prot
    Q6TYI6
    UniProtKB/TrEMBL
    A0A8D0MIH2, R4SEY7
    Related
    ENSSSCP00000032872.3, ENSSSCT00000039577.3
    Conserved Domains (2) summary
    smart00410
    Location:33 → 116
    IG_like; Immunoglobulin like
    cl11960
    Location:33 → 118
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

    Range
    36510253..36531796 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6TYI6.1 GenPept UniProtKB/Swiss-Prot:Q6TYI6

Gene LinkOut

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