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SLC1A4 solute carrier family 1 member 4 [ Sus scrofa (pig) ]

Gene ID: 396600, updated on 17-Aug-2024

Summary

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Official Symbol
SLC1A4provided by VGNC
Official Full Name
solute carrier family 1 member 4provided by VGNC
Primary source
VGNC:VGNC:92966
See related
Ensembl:ENSSSCG00000028282
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
ASCT1
Expression
Broad expression in ovary (RPKM 14.2), liver (RPKM 5.0) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See SLC1A4 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (76938102..76970519, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (80747982..80754397, complement)

Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene RAB1A, member RAS oncogene family Neighboring gene centrosomal protein 68 Neighboring gene uncharacterized LOC102160963 Neighboring gene SERTA domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Short communication: amino acid transporters in porcine mammary gland during lactation. Laspiur JP, et al. J Dairy Sci, 2004 Oct. PMID 15377602
  2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-alanine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables L-aspartate transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables L-serine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables L-threonine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-glutamate transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in L-serine transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neutral amino acid transporter A
Names
neutral amino acid transporter ASCT1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

    Range
    76938102..76970519 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021087450.1 → XP_020943109.1  neutral amino acid transporter A isoform X1

    UniProtKB/TrEMBL
    A0A4X1WAU5, A0A8D0WNL7, I3LAL2
    Related
    ENSSSCP00000021080.2, ENSSSCT00000029680.4
    Conserved Domains (1) summary
    pfam00375
    Location:72 → 477
    SDF; Sodium:dicarboxylate symporter family

  2. XM_013996100.2 → XP_013851554.1  neutral amino acid transporter A isoform X2

    Conserved Domains (1) summary
    pfam00375
    Location:2 → 257
    SDF; Sodium:dicarboxylate symporter family
Nucleotide Protein Strain
Heading Accession and Version

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