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MSMO1 methylsterol monooxygenase 1 [ Sus scrofa (pig) ]

Gene ID: 396590, updated on 5-Mar-2024

Summary

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Official Symbol
MSMO1provided by VGNC
Official Full Name
methylsterol monooxygenase 1provided by VGNC
Primary source
VGNC:VGNC:98941
See related
Ensembl:ENSSSCG00000008857
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
SC4MOL
Expression
Broad expression in liver (RPKM 114.4), mixtures (RPKM 55.4) and 6 other tissues See more
Orthologs
human mouse all
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Genomic context

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See MSMO1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 8 NC_010450.4 (43726834..43745784, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 8 NC_010450.3 (45557631..45618277, complement)

Chromosome 8 - NC_010450.4Genomic Context describing neighboring genes Neighboring gene tolloid like 1 Neighboring gene uncharacterized LOC110262093 Neighboring gene carboxypeptidase E Neighboring gene kelch like family member 2 Neighboring gene transmembrane protein 192

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables C-4 methylsterol oxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sterol biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
methylsterol monooxygenase 1
Names
C-4 methylsterol oxidase
sterol-C4-methyl oxidase
sterol-C4-methyl oxidase-like protein
NP_998917.1
XP_005656560.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213752.1 → NP_998917.1  methylsterol monooxygenase 1

    See identical proteins and their annotated locations for NP_998917.1

    Status: PROVISIONAL

    Source sequence(s)
    AY370690
    UniProtKB/Swiss-Prot
    Q6UGB2
    UniProtKB/TrEMBL
    A0A8D0MBF3
    Related
    ENSSSCP00000079094.1, ENSSSCT00000096185.1
    Conserved Domains (2) summary
    COG3000
    Location:60 → 274
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]
    pfam04116
    Location:145 → 274
    FA_hydroxylase; Fatty acid hydroxylase superfamily

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010450.4 Reference Sscrofa11.1 Primary Assembly

    Range
    43726834..43745784 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005656503.3 → XP_005656560.1  methylsterol monooxygenase 1 isoform X1

    See identical proteins and their annotated locations for XP_005656560.1

    UniProtKB/TrEMBL
    A0A4X1U637, A0A8D0MBF3, A0A8D0VTM9, D0G7F0
    Related
    ENSSSCP00000036001.1, ENSSSCT00000045796.3
    Conserved Domains (2) summary
    COG3000
    Location:60 → 274
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]
    pfam04116
    Location:145 → 274
    FA_hydroxylase; Fatty acid hydroxylase superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6UGB2.1 GenPept UniProtKB/Swiss-Prot:Q6UGB2

Gene LinkOut

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