U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SSRP1 structure specific recognition protein 1 [ Gallus gallus (chicken) ]

Gene ID: 396509, updated on 10-Oct-2024

Summary

Go to the top of the page Help
Symbol
SSRP1provided by CGNC
Full Name
structure specific recognition protein 1provided by CGNC
Primary source
CGNC:49844
See related
Ensembl:ENSGALG00010026457
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
CIIDBP
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SSRP1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
19
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (16586164..16594323)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (16546448..16554611)

Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene tandem PRG2/PRG3 gene pair Neighboring gene purinergic receptor P2X 3 Neighboring gene tankyrase 1 binding protein 1 Neighboring gene apelin receptor

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Rat and chick cDNA clones encoding HMG-like proteins. Wang L, et al. Nucleic Acids Res, 1993 Mar 25. PMID 8464746, Free PMC Article
  2. Delta-crystallin enhancer binding protein delta EF1 is a zinc finger-homeodomain protein implicated in postgastrulation embryogenesis. Funahashi J, et al. Development, 1993 Oct. PMID 7904558
  3. CENP-H-containing complex facilitates centromere deposition of CENP-A in cooperation with FACT and CHD1. Okada M, et al. Mol Biol Cell, 2009 Sep. PMID 19625449, Free PMC Article
  4. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. CENP-H-containing complex facilitates deposition of newly synthesized CENP-A into centromeric chromatin in cooperation with FACT and CHD1.
    Title: CENP-H-containing complex facilitates centromere deposition of CENP-A in cooperation with FACT and CHD1.
Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of FACT complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
FACT complex subunit SSRP1
Names
T160
delta-crystallin enhancer binding protein
facilitates chromatin transcription complex subunit SSRP1
high mobility group 1 protein
recombination signal sequence recognition protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001005796.3 → NP_001005796.2  FACT complex subunit SSRP1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000214
    UniProtKB/TrEMBL
    A0A8V1AB71, B6ZLK1
    Conserved Domains (2) summary
    COG5165
    Location:21 → 495
    POB3; Nucleosome-binding factor SPN, POB3 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
    pfam00505
    Location:545 → 612
    HMG_box; HMG (high mobility group) box

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    16586164..16594323
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015286773.4 → XP_015142259.1  FACT complex subunit SSRP1 isoform X1

    UniProtKB/TrEMBL
    A0A8V1A0V3, A0A8V1AB71
    Conserved Domains (4) summary
    COG5165
    Location:21 → 498
    POB3; Nucleosome-binding factor SPN, POB3 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
    cd13231
    Location:332 → 427
    PH2_SSRP1-like; Structure Specific Recognition protein 1 (SSRP1) Pleckstrin homology (PH) domain, repeat 2
    pfam00505
    Location:548 → 615
    HMG_box; HMG (high mobility group) box
    pfam03531
    Location:75 → 284
    SSrecog; Structure-specific recognition protein (SSRP1)

  2. XM_040700744.2 → XP_040556678.1  FACT complex subunit SSRP1 isoform X2

    UniProtKB/TrEMBL
    A0A8V1AB71, B6ZLK1
    Related
    ENSGALP00010039499.1, ENSGALT00010064330.1
    Conserved Domains (2) summary
    COG5165
    Location:21 → 495
    POB3; Nucleosome-binding factor SPN, POB3 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
    pfam00505
    Location:545 → 612
    HMG_box; HMG (high mobility group) box

  3. XM_015286772.4 → XP_015142258.1  FACT complex subunit SSRP1 isoform X1

    UniProtKB/TrEMBL
    A0A8V1A0V3, A0A8V1AB71
    Conserved Domains (4) summary
    COG5165
    Location:21 → 498
    POB3; Nucleosome-binding factor SPN, POB3 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
    cd13231
    Location:332 → 427
    PH2_SSRP1-like; Structure Specific Recognition protein 1 (SSRP1) Pleckstrin homology (PH) domain, repeat 2
    pfam00505
    Location:548 → 615
    HMG_box; HMG (high mobility group) box
    pfam03531
    Location:75 → 284
    SSrecog; Structure-specific recognition protein (SSRP1)

  4. XM_015286771.4 → XP_015142257.1  FACT complex subunit SSRP1 isoform X1

    UniProtKB/TrEMBL
    A0A8V1A0V3, A0A8V1AB71
    Related
    ENSGALP00010039501.1, ENSGALT00010064341.1
    Conserved Domains (4) summary
    COG5165
    Location:21 → 498
    POB3; Nucleosome-binding factor SPN, POB3 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
    cd13231
    Location:332 → 427
    PH2_SSRP1-like; Structure Specific Recognition protein 1 (SSRP1) Pleckstrin homology (PH) domain, repeat 2
    pfam00505
    Location:548 → 615
    HMG_box; HMG (high mobility group) box
    pfam03531
    Location:75 → 284
    SSrecog; Structure-specific recognition protein (SSRP1)

  5. XM_015286774.4 → XP_015142260.1  FACT complex subunit SSRP1 isoform X2

    UniProtKB/TrEMBL
    A0A8V1AB71, B6ZLK1
    Related
    ENSGALP00010039503.1, ENSGALT00010064347.1
    Conserved Domains (2) summary
    COG5165
    Location:21 → 495
    POB3; Nucleosome-binding factor SPN, POB3 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
    pfam00505
    Location:545 → 612
    HMG_box; HMG (high mobility group) box

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    16546448..16554611
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046917970.1 → XP_046773926.1  FACT complex subunit SSRP1 isoform X1

    UniProtKB/TrEMBL
    A0A8V1A0V3

  2. XM_046917972.1 → XP_046773928.1  FACT complex subunit SSRP1 isoform X2

    UniProtKB/TrEMBL
    B6ZLK1

  3. XM_046917969.1 → XP_046773925.1  FACT complex subunit SSRP1 isoform X1

    UniProtKB/TrEMBL
    A0A8V1A0V3

  4. XM_046917968.1 → XP_046773924.1  FACT complex subunit SSRP1 isoform X1

    UniProtKB/TrEMBL
    A0A8V1A0V3

  5. XM_046917971.1 → XP_046773927.1  FACT complex subunit SSRP1 isoform X2

    UniProtKB/TrEMBL
    B6ZLK1
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q04678.2 GenPept UniProtKB/Swiss-Prot:Q04678

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.