U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

COL3A1 collagen type III alpha 1 chain [ Gallus gallus (chicken) ]

Gene ID: 396340, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
COL3A1provided by CGNC
Official Full Name
collagen type III alpha 1 chainprovided by CGNC
Primary source
CGNC:49759
See related
Ensembl:ENSGALG00010013170
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
collagen
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 7
Exon count:
68
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 7 NC_052538.1 (671206..805182, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 7 NC_052579.1 (610035..744110, complement)

Chromosome 7 - NC_052538.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain 75 Neighboring gene collagen type V alpha 2 chain Neighboring gene uncharacterized LOC121111311 Neighboring gene uncharacterized LOC121111310 Neighboring gene GULP PTB domain containing engulfment adaptor 1 Neighboring gene uncharacterized LOC121111312 Neighboring gene tissue factor pathway inhibitor

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. An alternative transcript of the chick type III collagen gene that does not encode type III collagen. Nah HD, et al. J Biol Chem, 1994 Jun 10. PMID 8206952
  2. A conserved nucleotide sequence, coding for a segment of the C-propeptide, is found at the same location in different collagen genes. Yamada Y, et al. Nucleic Acids Res, 1983 May 11. PMID 6856474, Free PMC Article
  3. Conservation of the sizes for one but not another class of exons in two chick collagen genes. Yamada Y, et al. Nature, 1984 Jul 26-Aug 1. PMID 6547770
  4. Isolation and characterization of a genomic clone encoding chick alpha 1 type III collagen. Yamada Y, et al. J Biol Chem, 1983 Mar 10. PMID 6298201
  5. A uniquely conserved regulatory signal is found around the translation initiation site in three different collagen genes. Yamada Y, et al. J Biol Chem, 1983 Dec 25. PMID 6689169

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
collagen alpha-1(III) chain
Names
alpha-1 type III collagen
collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant)
type III collagen

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205380.3 → NP_990711.2  collagen alpha-1(III) chain precursor

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000235
    UniProtKB/TrEMBL
    A0A1D5PE57
    Related
    ENSGALP00010018468.1, ENSGALT00010031600.1
    Conserved Domains (3) summary
    pfam01391
    Location:956 → 1015
    Collagen; Collagen triple helix repeat (20 copies)
    pfam00093
    Location:31 → 87
    VWC; von Willebrand factor type C domain
    pfam01410
    Location:1227 → 1459
    COLFI; Fibrillar collagen C-terminal domain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    671206..805182 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046943515.1 → XP_046799471.1  collagen alpha-1(III) chain isoform X1

  2. XM_046943518.1 → XP_046799474.1  collagen alpha-1(III) chain isoform X1

  3. XM_046943514.1 → XP_046799470.1  collagen alpha-1(III) chain isoform X1

  4. XM_046943507.1 → XP_046799463.1  collagen alpha-1(III) chain isoform X1

  5. XM_040703365.2 → XP_040559299.1  collagen alpha-1(III) chain isoform X1

    Conserved Domains (3) summary
    pfam00093
    Location:13 → 69
    VWC; von Willebrand factor type C domain
    pfam01391
    Location:941 → 997
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01410
    Location:1209 → 1441
    COLFI; Fibrillar collagen C-terminal domain

  6. XM_040703363.2 → XP_040559297.1  collagen alpha-1(III) chain isoform X1

    Conserved Domains (3) summary
    pfam00093
    Location:13 → 69
    VWC; von Willebrand factor type C domain
    pfam01391
    Location:941 → 997
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01410
    Location:1209 → 1441
    COLFI; Fibrillar collagen C-terminal domain

  7. XM_046943512.1 → XP_046799468.1  collagen alpha-1(III) chain isoform X1

  8. XM_046943509.1 → XP_046799465.1  collagen alpha-1(III) chain isoform X1

  9. XM_046943511.1 → XP_046799467.1  collagen alpha-1(III) chain isoform X1

  10. XM_046943510.1 → XP_046799466.1  collagen alpha-1(III) chain isoform X1

  11. XM_046943508.1 → XP_046799464.1  collagen alpha-1(III) chain isoform X1

  12. XM_046943519.1 → XP_046799475.1  collagen alpha-1(III) chain isoform X3

  13. XM_046943516.1 → XP_046799472.1  collagen alpha-1(III) chain isoform X1

  14. XM_046943503.1 → XP_046799459.1  collagen alpha-1(III) chain isoform X1

  15. XM_046943504.1 → XP_046799460.1  collagen alpha-1(III) chain isoform X1

  16. XM_046943506.1 → XP_046799462.1  collagen alpha-1(III) chain isoform X1

  17. XM_046943505.1 → XP_046799461.1  collagen alpha-1(III) chain isoform X1

  18. XM_040703364.2 → XP_040559298.1  collagen alpha-1(III) chain isoform X1

    Conserved Domains (3) summary
    pfam00093
    Location:13 → 69
    VWC; von Willebrand factor type C domain
    pfam01391
    Location:941 → 997
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01410
    Location:1209 → 1441
    COLFI; Fibrillar collagen C-terminal domain

  19. XM_046943513.1 → XP_046799469.1  collagen alpha-1(III) chain isoform X1

  20. XM_040703362.2 → XP_040559296.1  collagen alpha-1(III) chain isoform X1

    Conserved Domains (3) summary
    pfam00093
    Location:13 → 69
    VWC; von Willebrand factor type C domain
    pfam01391
    Location:941 → 997
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01410
    Location:1209 → 1441
    COLFI; Fibrillar collagen C-terminal domain

  21. XM_046943502.1 → XP_046799458.1  collagen alpha-1(III) chain isoform X1

  22. XM_015289138.3 → XP_015144624.1  collagen alpha-1(III) chain isoform X1

    Conserved Domains (3) summary
    pfam00093
    Location:13 → 69
    VWC; von Willebrand factor type C domain
    pfam01391
    Location:941 → 997
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01410
    Location:1209 → 1441
    COLFI; Fibrillar collagen C-terminal domain

  23. XM_046943517.1 → XP_046799473.1  collagen alpha-1(III) chain isoform X1

  24. XM_025152154.3 → XP_025007922.1  collagen alpha-1(III) chain isoform X2

    UniProtKB/TrEMBL
    A0A8V0YQR3
    Related
    ENSGALP00010018512.1, ENSGALT00010031648.1
    Conserved Domains (3) summary
    pfam01391
    Location:931 → 990
    Collagen; Collagen triple helix repeat (20 copies)
    pfam00093
    Location:31 → 87
    VWC; von Willebrand factor type C domain
    pfam01410
    Location:1202 → 1434
    COLFI; Fibrillar collagen C-terminal domain

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    610035..744110 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046921179.1 → XP_046777135.1  collagen alpha-1(III) chain isoform X1

  2. XM_046921182.1 → XP_046777138.1  collagen alpha-1(III) chain isoform X1

  3. XM_046921178.1 → XP_046777134.1  collagen alpha-1(III) chain isoform X1

  4. XM_046921170.1 → XP_046777126.1  collagen alpha-1(III) chain isoform X1

  5. XM_046921177.1 → XP_046777133.1  collagen alpha-1(III) chain isoform X1

  6. XM_046921163.1 → XP_046777119.1  collagen alpha-1(III) chain isoform X1

  7. XM_046921167.1 → XP_046777123.1  collagen alpha-1(III) chain isoform X1

  8. XM_046921166.1 → XP_046777122.1  collagen alpha-1(III) chain isoform X1

  9. XM_046921164.1 → XP_046777120.1  collagen alpha-1(III) chain isoform X1

  10. XM_046921176.1 → XP_046777132.1  collagen alpha-1(III) chain isoform X1

  11. XM_046921171.1 → XP_046777127.1  collagen alpha-1(III) chain isoform X1

  12. XM_046921175.1 → XP_046777131.1  collagen alpha-1(III) chain isoform X1

  13. XM_046921172.1 → XP_046777128.1  collagen alpha-1(III) chain isoform X1

  14. XM_046921174.1 → XP_046777130.1  collagen alpha-1(III) chain isoform X1

  15. XM_046921173.1 → XP_046777129.1  collagen alpha-1(III) chain isoform X1

  16. XM_046921169.1 → XP_046777125.1  collagen alpha-1(III) chain isoform X1

  17. XM_046921185.1 → XP_046777141.1  collagen alpha-1(III) chain isoform X3

  18. XM_046921180.1 → XP_046777136.1  collagen alpha-1(III) chain isoform X1

  19. XM_046921161.1 → XP_046777117.1  collagen alpha-1(III) chain isoform X1

  20. XM_046921165.1 → XP_046777121.1  collagen alpha-1(III) chain isoform X1

  21. XM_046921168.1 → XP_046777124.1  collagen alpha-1(III) chain isoform X1

  22. XM_046921162.1 → XP_046777118.1  collagen alpha-1(III) chain isoform X1

  23. XM_046921181.1 → XP_046777137.1  collagen alpha-1(III) chain isoform X1

  24. XM_046921184.1 → XP_046777140.1  collagen alpha-1(III) chain isoform X2

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P12105.2 GenPept UniProtKB/Swiss-Prot:P12105

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.