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HPCAL1 hippocalcin like 1 [ Gallus gallus (chicken) ]

Gene ID: 396161, updated on 10-Oct-2024

Summary

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Symbol
HPCAL1provided by CGNC
Full Name
hippocalcin like 1provided by CGNC
Primary source
CGNC:49679
See related
Ensembl:ENSGALG00010002474
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
REM1; REM-1
Orthologs
human all
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Genomic context

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See HPCAL1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
13
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (96411830..96463795)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (96226804..96278785)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121110475 Neighboring gene uncharacterized LOC121110476 Neighboring gene microRNA 6655 Neighboring gene uncharacterized LOC121110477 Neighboring gene uncharacterized LOC121110478 Neighboring gene ornithine decarboxylase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Rem-1, a putative direct target gene of the Myb-Ets fusion oncoprotein in haematopoietic progenitors, is a member of the recoverin family. Kraut N, et al. Oncogene, 1995 Mar 16. PMID 7700627
  2. Conserved BK channel-protein interactions reveal signals relevant to cell death and survival. Sokolowski B, et al. PLoS One, 2011. PMID 22174833, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hippocalcin-like protein 1
Names
protein Rem-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205234.2 → NP_990565.1  hippocalcin-like protein 1

    See identical proteins and their annotated locations for NP_990565.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000066
    UniProtKB/Swiss-Prot
    P42324
    UniProtKB/TrEMBL
    A0A8V0XGU8
    Related
    ENSGALP00010003553.1, ENSGALT00010005714.1
    Conserved Domains (1) summary
    COG5126
    Location:13 → 179
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    96411830..96463795
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015276026.4 → XP_015131512.1  hippocalcin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P42324
    UniProtKB/TrEMBL
    A0A8V0XGU8
    Conserved Domains (1) summary
    COG5126
    Location:13 → 179
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

  2. XM_025148553.3 → XP_025004321.1  hippocalcin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P42324
    UniProtKB/TrEMBL
    A0A8V0XGU8
    Conserved Domains (1) summary
    COG5126
    Location:13 → 179
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

  3. XM_040696860.2 → XP_040552794.1  hippocalcin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P42324
    UniProtKB/TrEMBL
    A0A8V0XGU8
    Conserved Domains (1) summary
    COG5126
    Location:13 → 179
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

  4. XM_046938520.1 → XP_046794476.1  hippocalcin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P42324

  5. XM_046938518.1 → XP_046794474.1  hippocalcin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P42324

  6. XM_015276028.3 → XP_015131514.1  hippocalcin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P42324
    UniProtKB/TrEMBL
    A0A8V0XGU8
    Conserved Domains (1) summary
    COG5126
    Location:13 → 179
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

  7. XM_046938519.1 → XP_046794475.1  hippocalcin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P42324

  8. XM_040696864.2 → XP_040552798.1  hippocalcin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P42324
    UniProtKB/TrEMBL
    A0A8V0XGU8
    Conserved Domains (1) summary
    COG5126
    Location:13 → 179
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

  9. XM_015276027.4 → XP_015131513.1  hippocalcin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P42324
    UniProtKB/TrEMBL
    A0A8V0XGU8
    Conserved Domains (1) summary
    COG5126
    Location:13 → 179
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

  10. XM_025148555.3 → XP_025004323.1  hippocalcin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P42324
    UniProtKB/TrEMBL
    A0A8V0XGU8
    Conserved Domains (1) summary
    COG5126
    Location:13 → 179
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    96226804..96278785
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046913202.1 → XP_046769158.1  hippocalcin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P42324

  2. XM_046913207.1 → XP_046769163.1  hippocalcin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P42324

  3. XM_046913206.1 → XP_046769162.1  hippocalcin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P42324

  4. XM_046913199.1 → XP_046769155.1  hippocalcin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P42324

  5. XM_046913200.1 → XP_046769156.1  hippocalcin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P42324

  6. XM_046913204.1 → XP_046769160.1  hippocalcin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P42324

  7. XM_046913203.1 → XP_046769159.1  hippocalcin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P42324

  8. XM_046913208.1 → XP_046769164.1  hippocalcin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P42324

  9. XM_046913201.1 → XP_046769157.1  hippocalcin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P42324

  10. XM_046913205.1 → XP_046769161.1  hippocalcin-like protein 1 isoform X1

    UniProtKB/Swiss-Prot
    P42324
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P42324.2 GenPept UniProtKB/Swiss-Prot:P42324

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