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HAND1 heart and neural crest derivatives expressed 1 [ Gallus gallus (chicken) ]

Gene ID: 395812, updated on 17-Aug-2024

Summary

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Symbol
HAND1provided by CGNC
Full Name
heart and neural crest derivatives expressed 1provided by CGNC
Primary source
CGNC:49492
See related
Ensembl:ENSGALG00010015835
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
eHAND
Orthologs
human mouse all
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Genomic context

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See HAND1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
2
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 13 NC_052544.1 (11737292..11738824)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 13 NC_052585.1 (11751257..11752789)

Chromosome 13 - NC_052544.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107054526 Neighboring gene fatty acid hydroxylase domain containing 2 Neighboring gene La ribonucleoprotein domain family member 1 Neighboring gene microRNA 1778 Neighboring gene SAP30 like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A subclass of bHLH proteins required for cardiac morphogenesis. Srivastava D, et al. Science, 1995 Dec 22. PMID 8533092
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heart development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heart- and neural crest derivatives-expressed protein 1
Names
extraembryonic tissues, heart, autonomic nervous system and neural crest derivatives-expressed protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_204965.2 → NP_990296.1  heart- and neural crest derivatives-expressed protein 1

    See identical proteins and their annotated locations for NP_990296.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000256
    UniProtKB/Swiss-Prot
    Q90691
    Related
    ENSGALP00010022003.1, ENSGALT00010038132.1
    Conserved Domains (1) summary
    smart00353
    Location:92 → 140
    HLH; helix loop helix domain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052544.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    11737292..11738824
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046900292.1 → XP_046756248.1  heart- and neural crest derivatives-expressed protein 1 isoform X1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052585.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    11751257..11752789
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046926841.1 → XP_046782797.1  heart- and neural crest derivatives-expressed protein 1 isoform X1

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q90691.1 GenPept UniProtKB/Swiss-Prot:Q90691

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.