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ATP2A3 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3 [ Gallus gallus (chicken) ]

Gene ID: 395707, updated on 10-Oct-2024

Summary

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Symbol
ATP2A3provided by CGNC
Full Name
ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3provided by CGNC
Primary source
CGNC:1084
See related
Ensembl:ENSGALG00010029576
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
SERCA
Orthologs
human mouse all
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Genomic context

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See ATP2A3 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
23
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 19 NC_052550.1 (3759270..3795957)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 19 NC_052591.1 (3487913..3524487)

Chromosome 19 - NC_052550.1Genomic Context describing neighboring genes Neighboring gene cytochrome b5 domain containing 2 Neighboring gene microRNA 6592 Neighboring gene zinc finger ZZ-type and EF-hand domain containing 1 Neighboring gene purinergic receptor P2X 1 Neighboring gene calcium/calmodulin dependent protein kinase kinase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A developmental profile of the levels of calcium pumps in chick cerebellum. Sepúlveda MR, et al. J Neurochem, 2005 Nov. PMID 16104848
  2. Identification of avian sarcoplasmic reticulum Ca(2+)-ATPase (SERCA3) as a novel 1,25(OH)(2)D(3) target gene in the monocytic lineage. Machuca I, et al. Exp Cell Res, 1999 Aug 1. PMID 10413590
  3. Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags. Hubbard SJ, et al. Genome Res, 2005 Jan. PMID 15590942, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables P-type calcium transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sarcoplasmic/endoplasmic reticulum calcium ATPase 3
Names
ATPase, Ca++ transporting, ubiquitous
SERCA3
SR Ca(2+)-ATPase 3
calcium pump 3
chkSERCA3
sarcoendoplasmic reticulum calcium ATPase
NP_990222.1
XP_015151158.3
XP_046758247.1
XP_046785864.1
XP_046785865.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_204891.2 → NP_990222.1  sarcoplasmic/endoplasmic reticulum calcium ATPase 3

    See identical proteins and their annotated locations for NP_990222.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000323
    UniProtKB/TrEMBL
    A0A8V1AMS2
    Related
    ENSGALP00010044182.1, ENSGALT00010071492.1
    Conserved Domains (6) summary
    TIGR01116
    Location:53 → 989
    ATPase-IIA1_Ca; sarco/endoplasmic reticulum calcium-translocating P-type ATPase
    pfam00122
    Location:92 → 340
    E1-E2_ATPase; E1-E2 ATPase
    pfam00689
    Location:784 → 987
    Cation_ATPase_C; Cation transporting ATPase, C-terminus
    pfam00690
    Location:4 → 72
    Cation_ATPase_N; Cation transporter/ATPase, N-terminus
    pfam12710
    Location:604 → 712
    HAD; haloacid dehalogenase-like hydrolase
    pfam13246
    Location:419 → 528
    Cation_ATPase; Cation transport ATPase (P-type)

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052550.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    3759270..3795957
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015295672.4 → XP_015151158.3  sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform X1

    UniProtKB/Swiss-Prot
    Q9YGL9
    UniProtKB/TrEMBL
    A0A8V1AMS2
    Related
    ENSGALP00010044181.1, ENSGALT00010071491.1
    Conserved Domains (1) summary
    cd02083
    Location:5 → 989
    P-type_ATPase_SERCA; sarco/endoplasmic reticulum Ca(2+)-ATPase (SERCA), similar to mammalian ATP2A1-3/SERCA1-3

  2. XM_046902291.1 → XP_046758247.1  sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform X2

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052591.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    3487913..3524487
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046929908.1 → XP_046785864.1  sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform X1

    UniProtKB/Swiss-Prot
    Q9YGL9
    Conserved Domains (1) summary
    cd02083
    Location:5 → 989
    P-type_ATPase_SERCA; sarco/endoplasmic reticulum Ca(2+)-ATPase (SERCA), similar to mammalian ATP2A1-3/SERCA1-3

  2. XM_046929909.1 → XP_046785865.1  sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform X2

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9YGL9.2 GenPept UniProtKB/Swiss-Prot:Q9YGL9

Gene LinkOut

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Molecular Biology Databases
Research Materials