RARRES1 retinoic acid receptor responder 1 [Gallus gallus (chicken)] - Gene

Summary

Symbol: RARRES1provided by CGNC
Full Name: retinoic acid receptor responder 1provided by CGNC
Primary source: CGNC:7304
See related: Ensembl:ENSGALG00010001183
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Gallus gallus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as: OCX32
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Genomic context

Location:: chromosome: 9

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
106	current	bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2)	9	NC_052540.1 (22148194..22155773)
106	current	bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2)	9	NC_052581.1 (21933684..21941262)

Chromosome 9 - NC_052540.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Study determined the nucleotide sequences of six ovocalyxin-32 exons in the parent individuals and analysed the association between ovocalyxin-32 and eggshell traits in the F2 individuals.
Title: Association between ovocalyxin-32 gene haplotypes and eggshell quality traits in an F2 intercross between two chicken lines divergently selected for eggshell strength.
In the present study, there was a significant association between c.381G>C of the OCX-32 gene and rate of egg production.
Title: Polymorphism of the ovocalyxin-32 gene and its association with egg production traits in the chicken.

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables metalloendopeptidase inhibitor activity	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in extracellular space	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: ovocalyxin-32

Names: 32 kDa eggshell matrix protein; OCX-32; ovocalyxin 32; retinoic acid receptor responder (tazarotene induced) 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_204534.5 → NP_989865.2 ovocalyxin-32 precursor

Status: VALIDATED

Source sequence(s)

JAENSK010000240

UniProtKB/Swiss-Prot

Q90YI1

UniProtKB/TrEMBL

C7G540

Related

ENSGALP00010001287.1, ENSGALT00010002737.1

Conserved Domains (1) summary

pfam06907
Location:39 → 252

Latexin