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OPTC opticin [ Gallus gallus (chicken) ]

Gene ID: 395130, updated on 10-Oct-2024

Summary

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Symbol
OPTCprovided by CGNC
Full Name
opticinprovided by CGNC
Primary source
CGNC:49183
See related
Ensembl:ENSGALG00010027379
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See OPTC in Genome Data Viewer
Location:
chromosome: 26
Exon count:
7
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 26 NC_052557.1 (5218024..5221477)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 26 NC_052598.1 (5171765..5175208)

Chromosome 26 - NC_052557.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107055172 Neighboring gene fibromodulin Neighboring gene uncharacterized LOC107055169 Neighboring gene proline and arginine rich end leucine rich repeat protein Neighboring gene uncharacterized LOC121107641 Neighboring gene ATPase plasma membrane Ca2+ transporting 4 Neighboring gene uncharacterized LOC107055168

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The expression pattern of opticin during chicken embryogenesis. Frolova EI, et al. Gene Expr Patterns, 2004 May. PMID 15053984
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
opticin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_204473.2 → NP_989804.2  opticin precursor

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000356
    UniProtKB/TrEMBL
    A0A8V1AEE3, Q6YEX8
    Conserved Domains (2) summary
    PRK15370
    Location:142 → 338
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    sd00033
    Location:161 → 184
    LRR_RI; leucine-rich repeat [structural motif]

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052557.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    5218024..5221477
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015298880.4 → XP_015154366.2  opticin isoform X1

    UniProtKB/TrEMBL
    A0A8V1AEE3, Q6YEX8
    Related
    ENSGALP00010040649.1, ENSGALT00010066383.1
    Conserved Domains (2) summary
    PRK15370
    Location:142 → 338
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    sd00033
    Location:161 → 184
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_046904084.1 → XP_046760040.1  opticin isoform X1

    UniProtKB/TrEMBL
    A0A8V1AEE3

  3. XM_046904085.1 → XP_046760041.1  opticin isoform X2

  4. XM_015298881.4 → XP_015154367.2  opticin isoform X1

    UniProtKB/TrEMBL
    A0A8V1AEE3, Q6YEX8
    Conserved Domains (2) summary
    PRK15370
    Location:142 → 338
    PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
    sd00033
    Location:161 → 184
    LRR_RI; leucine-rich repeat [structural motif]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052598.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    5171765..5175208
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046932844.1 → XP_046788800.1  opticin isoform X1

  2. XM_046932846.1 → XP_046788802.1  opticin isoform X1

  3. XM_046932847.1 → XP_046788803.1  opticin isoform X2

  4. XM_046932845.1 → XP_046788801.1  opticin isoform X1

Nucleotide Protein Strain
Heading Accession and Version

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