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sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 394994, updated on 4-Nov-2024

Summary

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Official Symbol
sgtaprovided by Xenbase
Official Full Name
small glutamine rich tetratricopeptide repeat co-chaperone alphaprovided by Xenbase
Primary source
Xenbase:XB-GENE-962231
See related
Ensembl:ENSXETG00000003714 AllianceGenome:Xenbase:XB-GENE-962231
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
sgt
Summary
Orthologous to human SGTA (small glutamine rich tetratricopeptide repeat co-chaperone alpha). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See sgta in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (99258529..99269790)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (80303866..80314287)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene guanine nucleotide binding protein (G protein), gamma 7 Neighboring gene DIRAS family GTP binding RAS like 1 Neighboring gene solute carrier family 39 member 3 Neighboring gene thimet oligopeptidase 1 Neighboring gene polo like kinase 5 (inactive)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
small glutamine-rich tetratricopeptide repeat-containing protein alpha
Names
alpha sgt
small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001037256.1 → NP_001032333.1  small glutamine-rich tetratricopeptide repeat-containing protein alpha

    See identical proteins and their annotated locations for NP_001032333.1

    Status: PROVISIONAL

    Source sequence(s)
    CR761100
    UniProtKB/TrEMBL
    B0BMN9, F6VB84, Q28H19
    Related
    ENSXETP00000109030.1, ENSXETT00000105936.1
    Conserved Domains (4) summary
    sd00006
    Location:88 → 116
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:122 → 155
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:87 → 153
    TPR_11; TPR repeat
    pfam16546
    Location:6 → 64
    SGTA_dimer; Homodimerization domain of SGTA

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    99258529..99269790
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012958515.3 → XP_012813969.1  small glutamine-rich tetratricopeptide repeat-containing protein alpha isoform X2

    UniProtKB/TrEMBL
    A0A8J0S8Y6
    Conserved Domains (3) summary
    PLN03088
    Location:102 → 212
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    sd00006
    Location:88 → 116
    TPR; TPR repeat [structural motif]
    pfam16546
    Location:5 → 64
    SGTA_dimer; Homodimerization domain of SGTA

  2. XM_012958499.3 → XP_012813953.1  small glutamine-rich tetratricopeptide repeat-containing protein alpha isoform X1

    See identical proteins and their annotated locations for XP_012813953.1

    UniProtKB/TrEMBL
    B0BMN9, F6VB84, Q28H19
    Conserved Domains (4) summary
    sd00006
    Location:88 → 116
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:122 → 155
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:87 → 153
    TPR_11; TPR repeat
    pfam16546
    Location:6 → 64
    SGTA_dimer; Homodimerization domain of SGTA

  3. XM_012958510.3 → XP_012813964.1  small glutamine-rich tetratricopeptide repeat-containing protein alpha isoform X1

    See identical proteins and their annotated locations for XP_012813964.1

    UniProtKB/TrEMBL
    B0BMN9, F6VB84, Q28H19
    Related
    ENSXETP00000008020.4, ENSXETT00000008020.4
    Conserved Domains (4) summary
    sd00006
    Location:88 → 116
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:122 → 155
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:87 → 153
    TPR_11; TPR repeat
    pfam16546
    Location:6 → 64
    SGTA_dimer; Homodimerization domain of SGTA

  4. XM_012958505.3 → XP_012813959.1  small glutamine-rich tetratricopeptide repeat-containing protein alpha isoform X1

    See identical proteins and their annotated locations for XP_012813959.1

    UniProtKB/TrEMBL
    B0BMN9, F6VB84, Q28H19
    Conserved Domains (4) summary
    sd00006
    Location:88 → 116
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:122 → 155
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:87 → 153
    TPR_11; TPR repeat
    pfam16546
    Location:6 → 64
    SGTA_dimer; Homodimerization domain of SGTA
Nucleotide Protein Strain
Heading Accession and Version

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