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cfh complement factor H [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 394826, updated on 17-Aug-2024

Summary

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Official Symbol
cfhprovided by Xenbase
Official Full Name
complement factor Hprovided by Xenbase
Primary source
Xenbase:XB-GENE-981265
See related
Ensembl:ENSXETG00000005261
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
hf1; hf2; hus; fhl1; armd4; arms1; cfhl3
Orthologs
human mouse all
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Genomic context

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See cfh in Genome Data Viewer
Location:
chromosome: 4
Exon count:
35
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (112303976..112465311, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016684160.1 (4955..24901)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100487926 Neighboring gene coagulation factor XIII B chain Neighboring gene potassium channel, sodium activated subfamily T, member 2 Neighboring gene U4 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC75594

General protein information

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Preferred Names
complement factor H
Names
complement component factor H
XP_031755817.1
XP_031755818.1
XP_031755819.1
XP_031755820.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    112303976..112465311 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031899958.1 → XP_031755818.1  complement factor H isoform X2

    UniProtKB/TrEMBL
    A0A803JPN9, A0A803K9X7
    Related
    ENSXETP00000117051.1, ENSXETT00000120112.1
    Conserved Domains (1) summary
    PHA02927
    Location:11 → 262
    PHA02927; secreted complement-binding protein; Provisional

  2. XM_031899957.1 → XP_031755817.1  complement factor H isoform X1

    UniProtKB/TrEMBL
    A0A803JPN9, A0A8J1JD52
    Conserved Domains (2) summary
    cd00033
    Location:1000 → 1056
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    PHA02927
    Location:11 → 262
    PHA02927; secreted complement-binding protein; Provisional

  3. XM_031899960.1 → XP_031755820.1  complement factor H isoform X4

    UniProtKB/TrEMBL
    A0A803J5S3, A0A8J1JFM0
    Related
    ENSXETP00000103203.1, ENSXETT00000107385.1
    Conserved Domains (1) summary
    PHA02927
    Location:11 → 262
    PHA02927; secreted complement-binding protein; Provisional

  4. XM_031899959.1 → XP_031755819.1  complement factor H isoform X3

    UniProtKB/TrEMBL
    A0A6I8QYZ8, A0A6I8RVD7, F6Q0T2
    Related
    ENSXETP00000089077.2, ENSXETT00000067929.2
    Conserved Domains (2) summary
    cd00033
    Location:816 → 871
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    PHA02927
    Location:11 → 262
    PHA02927; secreted complement-binding protein; Provisional

  5. NM_203887.1 → NP_989218.1  

    UniProtKB/TrEMBL
    Q6P4Z0
    Conserved Domains (3) summary
    cd00033
    Location:639 → 693
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    PHA02927
    Location:11 → 262
    PHA02927; secreted complement-binding protein; Provisional
    pfam00084
    Location:25 → 76
    Sushi; Sushi repeat (SCR repeat)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_203887.1: Suppressed sequence

    Description
    NM_203887.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from human: CFH (GeneID:3075).
Nucleotide Protein Strain
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