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cas6f type I-F CRISPR-associated endoribonuclease Cas6/Csy4 [ Pseudomonas amygdali pv. lachrymans str. M301315 ]

Gene ID: 39474799, updated on 6-Jun-2024

Summary

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Gene symbol
cas6f
Gene description
type I-F CRISPR-associated endoribonuclease Cas6/Csy4
Locus tag
PLA107_RS01915
Gene type
protein coding
Organism
Pseudomonas amygdali pv. lachrymans str. M301315 (strain: M301315, pathovar: lachrymans)
Lineage
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas amygdali
Old locus tag
PLA107_00040
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Genomic context

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Location:
plasmid: pMPPla107

NZ_CM000959.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene CRISPR-associated protein Csy3 Neighboring gene hypothetical protein Neighboring gene DUF262 domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CM000959.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dynamic evolution of pathogenicity revealed by sequencing and comparative genomics of 19 Pseudomonas syringae isolates. Baltrus DA, et al. PLoS Pathog, 2011 Jul. PMID 21799664, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
type I-F CRISPR-associated endoribonuclease Cas6/Csy4

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CM000959.1 Reference assembly

    Range
    9600..10193
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_005741649.1 type I-F CRISPR-associated endoribonuclease Cas6/Csy4 [Pseudomonas amygdali]

    See identical proteins and their annotated locations for WP_005741649.1

    UniProtKB/TrEMBL
    A0AAD0V9R5
    Conserved Domains (1) summary
    cl09835
    Location:8 → 197
    Cas6_I-F; CRISPR/Cas system-associated RAMP superfamily protein Cas6f
Nucleotide Protein
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