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rab3ip RAB3A interacting protein [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 394735, updated on 4-Nov-2024

Summary

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Official Symbol
rab3ipprovided by Xenbase
Official Full Name
RAB3A interacting proteinprovided by Xenbase
Primary source
Xenbase:XB-GENE-978871
See related
Ensembl:ENSXETG00000009042 AllianceGenome:Xenbase:XB-GENE-978871
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
rabin3; gtpat12
Summary
Predicted to enable guanyl-nucleotide exchange factor activity. Orthologous to human RAB3IP (RAB3A interacting protein). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See rab3ip in Genome Data Viewer
Location:
chromosome: 3
Exon count:
13
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (59167740..59197572)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (49729624..49761676)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene cathepsin E Neighboring gene bestrophin 3 Neighboring gene myelin regulatory factor like Neighboring gene CCR4-NOT transcription complex subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC75737

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
rab-3A-interacting protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_203799.1 → NP_989130.1  rab-3A-interacting protein

    See identical proteins and their annotated locations for NP_989130.1

    Status: PROVISIONAL

    Source sequence(s)
    BC061285
    UniProtKB/TrEMBL
    A0A803KJT4, F6W9L8, Q6P8E3
    Conserved Domains (2) summary
    pfam05262
    Location:100 → 225
    Borrelia_P83; Borrelia P83/100 protein
    pfam06428
    Location:170 → 238
    Sec2p; GDP/GTP exchange factor Sec2p

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    59167740..59197572
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012958766.2 → XP_012814220.1  rab-3A-interacting protein isoform X1

    See identical proteins and their annotated locations for XP_012814220.1

    UniProtKB/TrEMBL
    F6W9L8, Q28G01, Q6P8E3
    Conserved Domains (3) summary
    PRK12705
    Location:101 → 219
    PRK12705; hypothetical protein; Provisional
    pfam06428
    Location:170 → 238
    Sec2p; GDP/GTP exchange factor Sec2p
    cd21068
    Location:263 → 455
    Rab11BD_RAB3IP; Rab11 binding domain of Rab-3A-interacting protein (RAB3IP)

  2. XM_031897786.1 → XP_031753646.1  rab-3A-interacting protein isoform X1

    UniProtKB/TrEMBL
    F6W9L8, Q28G01, Q6P8E3
    Conserved Domains (3) summary
    PRK12705
    Location:101 → 219
    PRK12705; hypothetical protein; Provisional
    pfam06428
    Location:170 → 238
    Sec2p; GDP/GTP exchange factor Sec2p
    cd21068
    Location:263 → 455
    Rab11BD_RAB3IP; Rab11 binding domain of Rab-3A-interacting protein (RAB3IP)

  3. XM_012958764.1 → XP_012814218.1  rab-3A-interacting protein isoform X1

    See identical proteins and their annotated locations for XP_012814218.1

    UniProtKB/TrEMBL
    F6W9L8, Q28G01, Q6P8E3
    Related
    ENSXETP00000061842.3, ENSXETT00000060321.3
    Conserved Domains (3) summary
    PRK12705
    Location:101 → 219
    PRK12705; hypothetical protein; Provisional
    pfam06428
    Location:170 → 238
    Sec2p; GDP/GTP exchange factor Sec2p
    cd21068
    Location:263 → 455
    Rab11BD_RAB3IP; Rab11 binding domain of Rab-3A-interacting protein (RAB3IP)

  4. XM_012958765.3 → XP_012814219.1  rab-3A-interacting protein isoform X1

    See identical proteins and their annotated locations for XP_012814219.1

    UniProtKB/TrEMBL
    F6W9L8, Q28G01, Q6P8E3
    Conserved Domains (3) summary
    PRK12705
    Location:101 → 219
    PRK12705; hypothetical protein; Provisional
    pfam06428
    Location:170 → 238
    Sec2p; GDP/GTP exchange factor Sec2p
    cd21068
    Location:263 → 455
    Rab11BD_RAB3IP; Rab11 binding domain of Rab-3A-interacting protein (RAB3IP)
Nucleotide Protein Strain
Heading Accession and Version

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