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atp6v1e1 ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 394728, updated on 17-Aug-2024

Summary

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Official Symbol
atp6v1e1provided by Xenbase
Official Full Name
ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1provided by Xenbase
Primary source
Xenbase:XB-GENE-1006142
See related
Ensembl:ENSXETG00000000869
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
vma4; atp6e; atp6v1e
Orthologs
human mouse all
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Genomic context

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See atp6v1e1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (8710432..8720750)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683387.1 (414699..428103)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene 1 Neighboring gene BH3 interacting domain death agonist Neighboring gene solute carrier family 25 member 18 Neighboring gene CECR2, histone acetyl-lysine reader Neighboring gene adenosine deaminase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC75761

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables proton-transporting ATPase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of proton-transporting two-sector ATPase complex, catalytic domain IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
V-type proton ATPase subunit E 1
Names
ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E
NP_989123.1
XP_012814217.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_203792.1 → NP_989123.1  V-type proton ATPase subunit E 1

    See identical proteins and their annotated locations for NP_989123.1

    Status: PROVISIONAL

    Source sequence(s)
    BC061292
    UniProtKB/TrEMBL
    A0A6I8QBN5, A0A803J5C0, Q6P8D7
    Related
    ENSXETP00000065949.2, ENSXETT00000098866.2
    Conserved Domains (1) summary
    pfam01991
    Location:18 → 216
    vATP-synt_E; ATP synthase (E/31 kDa) subunit

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    8710432..8720750
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012958763.2 → XP_012814217.1  V-type proton ATPase subunit E 1 isoform X1

    See identical proteins and their annotated locations for XP_012814217.1

    UniProtKB/TrEMBL
    A0A6I8QBN5, A0A803J5C0, Q6P8D7
    Related
    ENSXETP00000111152.1, ENSXETT00000116338.1
    Conserved Domains (1) summary
    pfam01991
    Location:18 → 216
    vATP-synt_E; ATP synthase (E/31 kDa) subunit
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut