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lrtomt leucine rich transmembrane and O-methyltransferase domain containing [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 394652, updated on 4-Nov-2024

Summary

Official Symbol
lrtomtprovided by Xenbase
Official Full Name
leucine rich transmembrane and O-methyltransferase domain containingprovided by Xenbase
Primary source
Xenbase:XB-GENE-6257736
See related
Ensembl:ENSXETG00000044749 AllianceGenome:Xenbase:XB-GENE-6257736
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
comt2; dfnb63; lrrc51; lrtomt1; lrtomt2
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Genomic context

See lrtomt in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (179090974..179095202, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683486.1 (122563..126272, complement)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene paired like homeobox 2A Neighboring gene ClpB family mitochondrial disaggregase Neighboring gene zinc finger protein 674 Neighboring gene ankyrin repeat domain-containing protein 50-like

Genomic regions, transcripts, and products

General protein information

Preferred Names
uncharacterized protein LOC394652

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_203724.1NP_989055.1  uncharacterized protein LOC394652

    See identical proteins and their annotated locations for NP_989055.1

    Status: PREDICTED

    Source sequence(s)
    BC061330
    UniProtKB/TrEMBL
    F6WAS7, G1K3H0, Q6P899
    Conserved Domains (3) summary
    sd00031
    Location:5179
    LRR_1; leucine-rich repeat [structural motif]
    pfam14580
    Location:93171
    LRR_9; Leucine-rich repeat
    NF033189
    Location:37139
    internalin_A; class 1 internalin InlA

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    179090974..179095202 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012956647.3XP_012812101.1  uncharacterized protein LOC394652 isoform X2

    See identical proteins and their annotated locations for XP_012812101.1

    UniProtKB/TrEMBL
    F6WAS7, G1K3H0, Q6P899
    Conserved Domains (3) summary
    sd00031
    Location:5179
    LRR_1; leucine-rich repeat [structural motif]
    pfam14580
    Location:93171
    LRR_9; Leucine-rich repeat
    NF033189
    Location:37139
    internalin_A; class 1 internalin InlA
  2. XM_012956646.3XP_012812100.1  uncharacterized protein LOC394652 isoform X1

    UniProtKB/TrEMBL
    A0A803KJM8
    Related
    ENSXETP00000023052.3, ENSXETT00000023052.3
    Conserved Domains (3) summary
    cd00116
    Location:72153
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:72100
    LRR_1; leucine-rich repeat [structural motif]
    pfam13855
    Location:99159
    LRR_8; Leucine rich repeat