U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

supt3h SPT3 homolog, SAGA and STAGA complex component [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 394640, updated on 4-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
supt3hprovided by Xenbase
Official Full Name
SPT3 homolog, SAGA and STAGA complex componentprovided by Xenbase
Primary source
Xenbase:XB-GENE-955786
See related
Ensembl:ENSXETG00000001404 AllianceGenome:Xenbase:XB-GENE-955786
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to enable transcription coactivator activity. Predicted to act upstream of or within transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to human SUPT3H (SPT3 homolog, SAGA and STAGA complex component). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See supt3h in Genome Data Viewer
Location:
chromosome: 5
Exon count:
16
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (147615910..147937481)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (143381283..143691983)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105948523 Neighboring gene uncharacterized LOC116411097 Neighboring gene RUNX family transcription factor 2 Neighboring gene cell division cycle 5 like Neighboring gene opsin 8

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC75923

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
  
enables transcription coactivator activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
transcription initiation protein SPT3 homolog
Names
suppressor of Ty 3 homolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_203712.1 → NP_989043.1  transcription initiation protein SPT3 homolog

    See identical proteins and their annotated locations for NP_989043.1

    Status: PROVISIONAL

    Source sequence(s)
    BC061367
    UniProtKB/TrEMBL
    A0A6I8SEB9, Q6P863
    Related
    ENSXETP00000114275.1, ENSXETT00000112488.1
    Conserved Domains (1) summary
    pfam02269
    Location:28 → 119
    TFIID-18kDa; Transcription initiation factor IID, 18kD subunit

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    147615910..147937481
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012970256.3 → XP_012825710.1  transcription initiation protein SPT3 homolog isoform X3

    UniProtKB/TrEMBL
    A0A6I8SEB9, A0A8J0SVA7
    Related
    ENSXETP00000114241.1, ENSXETT00000106589.1
    Conserved Domains (1) summary
    pfam02269
    Location:28 → 119
    TFIID-18kDa; Transcription initiation factor IID, 18kD subunit

  2. XM_018093821.2 → XP_017949310.1  transcription initiation protein SPT3 homolog isoform X4

    UniProtKB/TrEMBL
    A0A6I8SEB9, A0A8J0STR6
    Related
    ENSXETP00000093130.2, ENSXETT00000076993.2

  3. XM_012970255.3 → XP_012825709.1  transcription initiation protein SPT3 homolog isoform X1

    UniProtKB/TrEMBL
    A0A6I8RWV9, A0A6I8SEB9
    Related
    ENSXETP00000085054.2, ENSXETT00000101409.2
    Conserved Domains (1) summary
    pfam02269
    Location:28 → 119
    TFIID-18kDa; Transcription initiation factor IID, 18kD subunit

  4. XM_031901600.1 → XP_031757460.1  transcription initiation protein SPT3 homolog isoform X2

    UniProtKB/TrEMBL
    A0A803K0T5, A0A8J1JKB9
    Related
    ENSXETP00000113916.1, ENSXETT00000113627.1
    Conserved Domains (1) summary
    cl02174
    Location:4 → 90
    TAF13; The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.