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stambpl1 STAM binding protein like 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 394606, updated on 4-Nov-2024

Summary

Official Symbol
stambpl1provided by Xenbase
Official Full Name
STAM binding protein like 1provided by Xenbase
Primary source
Xenbase:XB-GENE-5752500
See related
Ensembl:ENSXETG00000009278 AllianceGenome:Xenbase:XB-GENE-5752500
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
amsh-lp
Summary
Predicted to enable K63-linked deubiquitinase activity and metal-dependent deubiquitinase activity. Predicted to act upstream of or within protein K63-linked deubiquitination and proteolysis. Orthologous to human STAMBPL1 (STAM binding protein like 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See stambpl1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
12
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (12731245..12756307, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (4489818..4515414, complement)

Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene Fas cell surface death receptor Neighboring gene actin, alpha 2, smooth muscle, aorta Neighboring gene ankyrin repeat domain 22 Neighboring gene lipase A, lysosomal acid, cholesterol esterase

Genomic regions, transcripts, and products

General protein information

Preferred Names
AMSH-like protease
Names
associated molecule with the SH3 domain of STAM (AMSH) like protein
NP_989010.1
XP_031760781.1
XP_031760782.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_203679.1NP_989010.1  AMSH-like protease

    See identical proteins and their annotated locations for NP_989010.1

    Status: PROVISIONAL

    Source sequence(s)
    BC061390
    UniProtKB/TrEMBL
    A0A6I8QL18, F7CI23, Q6P841
    Related
    ENSXETP00000070298.2, ENSXETT00000092716.2
    Conserved Domains (3) summary
    cd08066
    Location:259429
    MPN_AMSH_like; Mov34/MPN/PAD-1 family
    pfam08969
    Location:26127
    USP8_dimer; USP8 dimerization domain
    pfam09805
    Location:132207
    Nop25; Nucleolar protein 12 (25kDa)

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    12731245..12756307 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031904921.1XP_031760781.1  AMSH-like protease isoform X1

    UniProtKB/TrEMBL
    A0A6I8QL18, F7CI23, Q6P841
    Related
    ENSXETP00000111976.1, ENSXETT00000120969.1
    Conserved Domains (3) summary
    cd08066
    Location:259429
    MPN_AMSH_like; Mov34/MPN/PAD-1 family
    pfam08969
    Location:26127
    USP8_dimer; USP8 dimerization domain
    pfam09805
    Location:132207
    Nop25; Nucleolar protein 12 (25kDa)
  2. XM_031904922.1XP_031760782.1  AMSH-like protease isoform X2

    UniProtKB/TrEMBL
    A0A803K9W9, F7CI23
    Related
    ENSXETP00000117191.1, ENSXETT00000124208.1
    Conserved Domains (3) summary
    cd08066
    Location:246416
    MPN_AMSH_like; Mov34/MPN/PAD-1 family
    pfam08969
    Location:13114
    USP8_dimer; USP8 dimerization domain
    pfam09805
    Location:119194
    Nop25; Nucleolar protein 12 (25kDa)