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ldhb.L lactate dehydrogenase B L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 394355, updated on 3-Jul-2024

Summary

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Official Symbol
ldhb.L
Official Full Name
lactate dehydrogenase B L homeolog
Primary source
Xenbase:XB-GENE-6254440
Locus tag
XELAEV_18016867mg
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ldha; ldh-h; ldhbb; trg-5; ldha-B; ldhb-a; ldhb-b; ldhb.S
Orthologs
human mouse all
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Genomic context

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See ldhb.L in Genome Data Viewer
Location:
chromosome: 3L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (20305776..20320206, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (11104720..11124054)

Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene tRNA-histidine guanylyltransferase 1-like L homeolog Neighboring gene tetraspanin 9 L homeolog Neighboring gene ankyrin repeat and BTB domain containing 3 L homeolog Neighboring gene uncharacterized LOC121401154

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolutionary relationships of lactate dehydrogenases (LDHs) from mammals, birds, an amphibian, fish, barley, and bacteria: LDH cDNA sequences from Xenopus, pig, and rat. Tsuji S, et al. Proc Natl Acad Sci U S A, 1994 Sep 27. PMID 7937776, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC83980

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables L-lactate dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within carboxylic acid metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
L-lactate dehydrogenase A chain
Names
LDH-A
lactate dehydrogenase A
lactate dehydrogenase B S homeolog
NP_001081050.1
XP_018106254.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001087581.1 → NP_001081050.1  L-lactate dehydrogenase A chain

    See identical proteins and their annotated locations for NP_001081050.1

    Status: PROVISIONAL

    Source sequence(s)
    BC080054
    UniProtKB/Swiss-Prot
    P42119, P42120, Q68EZ4
    Conserved Domains (2) summary
    cd05293
    Location:19 → 330
    LDH_1; A subgroup of L-lactate dehydrogenases
    PLN02602
    Location:15 → 332
    PLN02602; lactate dehydrogenase

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    20305776..20320206 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018250765.2 → XP_018106254.1  L-lactate dehydrogenase A chain isoform X1

    UniProtKB/Swiss-Prot
    P42119
    UniProtKB/TrEMBL
    A0A1L8GWQ3, A0A974DC46
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P42120.2 GenPept UniProtKB/Swiss-Prot:P42120

Gene LinkOut

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