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ssb.S Sjogren syndrome antigen B S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 394333, updated on 4-Nov-2024

Summary

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Official Symbol
ssb.S
Official Full Name
Sjogren syndrome antigen B S homeolog
Primary source
Xenbase:XB-GENE-6254453
Locus tag
XELAEV_18047160mg
See related
EnsemblRapid:ENSXLAG00005029790 AllianceGenome:Xenbase:XB-GENE-6254453
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
laa1; laa-a; larp3; ssb-a; ssb-b
Summary
Predicted to enable mRNA binding activity. Predicted to act upstream of or within tRNA processing. Predicted to be located in nucleus. Predicted to be part of ribonucleoprotein complex. Orthologous to human SSB (small RNA binding exonuclease protection factor La). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ssb.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (65967823..65975365)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (59304270..59311834)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene peptidylprolyl isomerase G (cyclophilin G) S homeolog Neighboring gene probable phosphatase phospho2 Neighboring gene uncharacterized LOC121399159 Neighboring gene myosin-IIIb-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. La proteins from Xenopus laevis. cDNA cloning and developmental expression. Scherly D, et al. J Mol Biol, 1993 May 20. PMID 8510143
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within RNA processing IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within tRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
lupus La protein homolog A
Names
La protein form A
Sjogren syndrome antigen B (autoantigen La)
la autoantigen homolog A
la ribonucleoprotein A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001087552.1 → NP_001081021.1  lupus La protein homolog A

    See identical proteins and their annotated locations for NP_001081021.1

    Status: PROVISIONAL

    Source sequence(s)
    X68817
    UniProtKB/Swiss-Prot
    P28048
    Related
    ENSXLAP00005089107.1, ENSXLAT00005090776.1
    Conserved Domains (3) summary
    cd08028
    Location:12 → 91
    LARP_3; La RNA-binding domain of La-related protein 3
    cd12291
    Location:112 → 183
    RRM1_La; RNA recognition motif 1 in La autoantigen (La or LARP3) and similar proteins
    cd12541
    Location:231 → 307
    RRM2_La; RNA recognition motif 2 in La autoantigen (La or LARP3) and similar proteins

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    65967823..65975365
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018237278.2 → XP_018092767.1  lupus La protein homolog A isoform X1

    UniProtKB/TrEMBL
    A0A974BUH6, Q4KLV5
    Related
    ENSXLAP00005089176.1, ENSXLAT00005090844.1
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P28048.1 GenPept UniProtKB/Swiss-Prot:P28048

Gene LinkOut

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Molecular Biology Databases
Research Materials