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CG10654 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 39428, updated on 2-Nov-2024

Summary

Official Symbol
CG10654provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0036294
Locus tag
Dmel_CG10654
See related
AllianceGenome:FB:FBgn0036294
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG10654
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in embryonic hindgut; embryonic proventriculus inner layer; larval muscle system; and larval somatic muscle cell. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See CG10654 in Genome Data Viewer
Location:
69C4-69C4; 3-38 cM
Exon count:
2
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (12505374..12507840, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (12498474..12500940, complement)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene antisense RNA:CR43868 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene vihar Neighboring gene sticky Neighboring gene long non-coding RNA:CR45168 Neighboring gene trailer hitch

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables transcription cis-regulatory region binding ISS
Inferred from Sequence or Structural Similarity
more info
 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
uncharacterized protein
Names
CG10654-PA
CG10654-PB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    12505374..12507840 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001274838.1NP_001261767.1  uncharacterized protein Dmel_CG10654, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001261767.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    M9PFA9, Q4V5B2
    Conserved Domains (3) summary
    sd00017
    Location:289314
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:323345
    zf-C2H2; Zinc finger, C2H2 type
    pfam07776
    Location:39115
    zf-AD; Zinc-finger associated domain (zf-AD)
  2. NM_140326.2NP_648583.2  uncharacterized protein Dmel_CG10654, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_648583.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q4V5B2, Q9VTY7
    Related
    FBpp0075703
    Conserved Domains (3) summary
    sd00017
    Location:263288
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:297319
    zf-C2H2; Zinc finger, C2H2 type
    pfam07776
    Location:39115
    zf-AD; Zinc-finger associated domain (zf-AD)