phf10 PHD finger protein 10 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: phf10provided by ZNC
Official Full Name: PHD finger protein 10provided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-1573
See related: Ensembl:ENSDARG00000070084 AllianceGenome:ZFIN:ZDB-GENE-040426-1573
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: XAP135; zgc:66233; zgc:85788
Summary: Predicted to enable metal ion binding activity. Predicted to act upstream of or within nervous system development. Predicted to be located in nucleus. Predicted to be part of npBAF complex. Orthologous to human PHF10 (PHD finger protein 10). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 13

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	13	NC_007124.7 (5978810..6001980)
105	previous assembly	GRCz10 (GCF_000002035.5)	13	NC_007124.6 (5850333..5873503)

Chromosome 13 - NC_007124.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within nervous system development	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of npBAF complex	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: PHD finger protein 10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200655.3 → NP_956949.3 PHD finger protein 10

Status: VALIDATED

Source sequence(s)

BX629343, EH455901, EH481640

UniProtKB/Swiss-Prot

A5PMM9, Q6NWE1, Q6TGV9

UniProtKB/TrEMBL

A0A8M1PBJ6, Z4YI11

Related

ENSDARP00000093339.3, ENSDART00000102563.5

Conserved Domains (2) summary

cd15528
Location:371 → 425

PHD1_PHF10; PHD finger 1 found in PHD finger protein 10 (PHF10) and similar proteins

cd15529
Location:427 → 470

PHD2_PHF10; PHD finger 2 found in PHD finger protein 10 (PHF10) and similar proteins