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znf131 zinc finger protein 131 [ Danio rerio (zebrafish) ]

Gene ID: 393477, updated on 12-Sep-2024

Summary

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Official Symbol
znf131provided by ZNC
Official Full Name
zinc finger protein 131provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1563
See related
Ensembl:ENSDARG00000068400 AllianceGenome:ZFIN:ZDB-GENE-040426-1563
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:66182; zgc:77600
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and metal ion binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF131 (zinc finger protein 131). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See znf131 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (31406446..31417148, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (31397501..31407709, complement)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene cAMP responsive element binding protein 3-like 3 like Neighboring gene NIM1 serine/threonine protein kinase a Neighboring gene uncharacterized LOC101887121 Neighboring gene uncharacterized LOC101887043 Neighboring gene uncharacterized LOC103911520 Neighboring gene selenoprotein P

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC66182

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 131

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200505.2 → NP_956799.2  zinc finger protein 131

    Status: VALIDATED

    Source sequence(s)
    AL929453
    UniProtKB/TrEMBL
    A0A2R8QJR9, A0A8M9Q3C6
    Related
    ENSDARP00000152732.1, ENSDART00000180204.1
    Conserved Domains (5) summary
    COG5048
    Location:310 → 441
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:259 → 279
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:257 → 279
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:24 → 120
    BTB; BTB/POZ domain
    pfam13465
    Location:339 → 364
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    31406446..31417148 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021478215.2 → XP_021333890.1  zinc finger protein 131 isoform X2

    UniProtKB/TrEMBL
    A0A8M9QII4
    Conserved Domains (5) summary
    COG5048
    Location:309 → 440
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:258 → 278
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:256 → 278
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:24 → 120
    BTB; BTB/POZ domain
    pfam13465
    Location:338 → 363
    zf-H2C2_2; Zinc-finger double domain

  2. XM_021478213.2 → XP_021333888.1  zinc finger protein 131 isoform X1

    UniProtKB/TrEMBL
    A0A2R8QJR9, A0A8M9Q3C6
    Conserved Domains (5) summary
    COG5048
    Location:310 → 441
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:259 → 279
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:257 → 279
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:24 → 120
    BTB; BTB/POZ domain
    pfam13465
    Location:339 → 364
    zf-H2C2_2; Zinc-finger double domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394733.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    163484..173893 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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