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sri sorcin [ Danio rerio (zebrafish) ]

Gene ID: 393344, updated on 2-Nov-2024

Summary

Official Symbol
sriprovided by ZNC
Official Full Name
sorcinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1356
See related
Ensembl:ENSDARG00000058593 AllianceGenome:ZFIN:ZDB-GENE-040426-1356
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:64070
Summary
Predicted to enable calcium ion binding activity. Predicted to be located in cytoplasm. Is expressed in epidermis; head mesenchyme; mucus secreting cell; periderm; and pronephric duct. Orthologous to human SRI (sorcin). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See sri in Genome Data Viewer
Location:
chromosome: 16
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (7242826..7260345)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (7325264..7342999)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene si:ch73-341k19.1 Neighboring gene uncharacterized LOC101882543 Neighboring gene 5'-nucleotidase, cytosolic IIIA Neighboring gene forkhead box O6 a Neighboring gene uncharacterized LOC137487874

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Pathways from PubChem

General gene information

Markers

Clone Names

  • MGC64070

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables calcium ion binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200373.1NP_956667.1  sorcin

    See identical proteins and their annotated locations for NP_956667.1

    Status: PROVISIONAL

    Source sequence(s)
    BC053237
    UniProtKB/TrEMBL
    Q7T365
    Conserved Domains (2) summary
    cd00051
    Location:67122
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cl08302
    Location:3792
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    7242826..7260345
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068213916.1XP_068070017.1  sorcin isoform X1

    Related
    ENSDARP00000075918.4, ENSDART00000081477.5