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zdhhc16b zinc finger DHHC-type palmitoyltransferase 16b [ Danio rerio (zebrafish) ]

Gene ID: 393316, updated on 2-Nov-2024

Summary

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Official Symbol
zdhhc16bprovided by ZNC
Official Full Name
zinc finger DHHC-type palmitoyltransferase 16bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1301
See related
Ensembl:ENSDARG00000015989 AllianceGenome:ZFIN:ZDB-GENE-040426-1301
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
DHHC-16B; zgc:63934
Summary
Predicted to enable palmitoyltransferase activity. Predicted to be involved in DNA damage response; fibroblast growth factor receptor signaling pathway involved in forebrain neuron fate commitment; and heart development. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in Golgi apparatus. Is expressed in telencephalon. Orthologous to human ZDHHC16 (zinc finger DHHC-type palmitoyltransferase 16). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See zdhhc16b in Genome Data Viewer
Location:
chromosome: 12
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (2850160..2869584, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (2815427..2834867, complement)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene ANTXR cell adhesion molecule 1c Neighboring gene ubiquitin domain containing 1b Neighboring gene MMS19 homolog, cytosolic iron-sulfur assembly component Neighboring gene protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) b Neighboring gene FAM20A golgi associated secretory pathway pseudokinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC63934

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables acyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables palmitoyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein-cysteine S-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in DNA damage response IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in fibroblast growth factor receptor signaling pathway involved in forebrain neuron fate commitment IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in heart development IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
palmitoyltransferase ZDHHC16B
Names
probable palmitoyltransferase ZDHHC16
zinc finger DHHC domain-containing protein 16B
zinc finger DHHC-type containing 16b
zinc finger, DHHC domain containing 16b
NP_001314728.1
XP_009304660.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001327799.1 → NP_001314728.1  palmitoyltransferase ZDHHC16B

    Status: VALIDATED

    Source sequence(s)
    CU459184
    UniProtKB/Swiss-Prot
    A0A0R4IF99
    Related
    ENSDARP00000127039.1, ENSDART00000152772.3
    Conserved Domains (2) summary
    pfam01529
    Location:154 → 283
    zf-DHHC; DHHC palmitoyltransferase
    cl19890
    Location:83 → 206
    zf-DHHC; DHHC palmitoyltransferase

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    2850160..2869584 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009306385.4 → XP_009304660.1  palmitoyltransferase ZDHHC16B isoform X1

    See identical proteins and their annotated locations for XP_009304660.1

    UniProtKB/Swiss-Prot
    A0A0R4IF99, A0A0R4IX74, F1R4N0, R4GEX6
    Conserved Domains (2) summary
    pfam01529
    Location:154 → 310
    zf-DHHC; DHHC palmitoyltransferase
    cl19890
    Location:83 → 206
    zf-DHHC; DHHC palmitoyltransferase

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_200345.1: Suppressed sequence

    Description
    NM_200345.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A0R4IF99.1 GenPept UniProtKB/Swiss-Prot:A0A0R4IF99

Gene LinkOut

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