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polr3c polymerase (RNA) III (DNA directed) polypeptide C [ Danio rerio (zebrafish) ]

Gene ID: 393201, updated on 2-Nov-2024

Summary

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Official Symbol
polr3cprovided by ZNC
Official Full Name
polymerase (RNA) III (DNA directed) polypeptide Cprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-992
See related
Ensembl:ENSDARG00000057562 AllianceGenome:ZFIN:ZDB-GENE-040426-992
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:56348
Summary
Predicted to enable single-stranded DNA binding activity. Predicted to act upstream of or within DNA-templated transcription. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Is expressed in telencephalon. Orthologous to human POLR3C (RNA polymerase III subunit C). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See polr3c in Genome Data Viewer
Location:
chromosome: 16
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (14249530..14280598)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (14359426..14390478)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene death associated protein 3 Neighboring gene glucosylceramidase beta 1 Neighboring gene ring finger protein 115a Neighboring gene integrin, alpha 10 Neighboring gene cellular retinoic acid binding protein 2, a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Comprehensive expression map of transcription regulators in the adult zebrafish telencephalon reveals distinct neurogenic niches. Diotel N, et al. J Comp Neurol, 2015 Jun 1. PMID 25556858, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Clone Names

  • MGC56348

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of DNA-directed RNA polymerase complex IEA
Inferred from Electronic Annotation
more info
  
part_of RNA polymerase III complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of RNA polymerase III complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DNA-directed RNA polymerase III subunit RPC3
Names
DNA-directed RNA polymerase III subunit C
RNA polymerase III subunit C3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200232.1 → NP_956526.1  DNA-directed RNA polymerase III subunit RPC3

    See identical proteins and their annotated locations for NP_956526.1

    Status: PROVISIONAL

    Source sequence(s)
    BC046092
    UniProtKB/Swiss-Prot
    Q7ZUX1
    Related
    ENSDARP00000059966.6, ENSDART00000059967.8
    Conserved Domains (2) summary
    pfam05645
    Location:149 → 350
    RNA_pol_Rpc82; RNA polymerase III subunit RPC82
    pfam08221
    Location:7 → 65
    HTH_9; RNA polymerase III subunit RPC82 helix-turn-helix domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    14249530..14280598
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068213914.1 → XP_068070015.1  DNA-directed RNA polymerase III subunit RPC3 isoform X2

  2. XM_068213913.1 → XP_068070014.1  DNA-directed RNA polymerase III subunit RPC3 isoform X1

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7ZUX1.1 GenPept UniProtKB/Swiss-Prot:Q7ZUX1

Gene LinkOut

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