U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

snap23.1 synaptosome associated protein 23.1 [ Danio rerio (zebrafish) ]

Gene ID: 393159, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
snap23.1provided by ZNC
Official Full Name
synaptosome associated protein 23.1provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-883
See related
Ensembl:ENSDARG00000012874 AllianceGenome:ZFIN:ZDB-GENE-040426-883
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:56072
Summary
Predicted to enable SNAP receptor activity and syntaxin binding activity. Predicted to be involved in synaptic vesicle fusion to presynaptic active zone membrane and synaptic vesicle priming. Predicted to be located in neuron projection and synapse. Predicted to be part of SNARE complex. Predicted to be active in plasma membrane. Orthologous to human SNAP23 (synaptosome associated protein 23). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See snap23.1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
10
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (33415332..33430689)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (33462817..33478178)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene zgc:162964 Neighboring gene epithelial cell transforming 2 like Neighboring gene coiled-coil domain containing 28A Neighboring gene synaptosome associated protein 23.2 Neighboring gene Ras and Rab interactor 3

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A genetic model of CEDNIK syndrome in zebrafish highlights the role of the SNARE protein Snap29 in neuromotor and epidermal development. Mastrodonato V, et al. Sci Rep, 2019 Feb 4. PMID 30718891, Free PMC Article
  2. Evolutionary recruitment of flexible Esrp-dependent splicing programs into diverse embryonic morphogenetic processes. Burguera D, et al. Nat Commun, 2017 Nov 27. PMID 29180615, Free PMC Article
  3. In vivo imaging of molecular interactions at damaged sarcolemma. Roostalu U, et al. Dev Cell, 2012 Mar 13. PMID 22421042
  4. Coherent but overlapping expression of microRNAs and their targets during vertebrate development. Shkumatava A, et al. Genes Dev, 2009 Feb 15. PMID 19240133, Free PMC Article
  5. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Markers

Homology

Clone Names

  • MGC56072

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables SNAP receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables syntaxin binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in exocytosis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in synaptic vesicle fusion to presynaptic active zone membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in synaptic vesicle priming IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of SNARE complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in synapse IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
synaptosomal-associated protein 23; synaptosome associated protein 23.1
Names
synaptosomal-associated protein 23.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200190.1 → NP_956484.1  synaptosome associated protein 23.1

    See identical proteins and their annotated locations for NP_956484.1

    Status: PROVISIONAL

    Source sequence(s)
    BC045896
    UniProtKB/TrEMBL
    A0A0R4IW20, A0A8N7XJG5, F6NZC2, Q7ZVE4
    Related
    ENSDARP00000014467.6, ENSDART00000025501.9
    Conserved Domains (3) summary
    cd15884
    Location:154 → 212
    SNARE_SNAP23C; C-terminal SNARE motif of SNAP23
    cd15889
    Location:11 → 75
    SNARE_SNAP25N_23N; N-terminal SNARE motif of SNAP25 and SNAP23
    pfam00835
    Location:86 → 152
    SNAP-25; SNAP-25 family

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    33415332..33430689
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005158725.4 → XP_005158782.1  synaptosomal-associated protein 23 isoform X1

    See identical proteins and their annotated locations for XP_005158782.1

    UniProtKB/TrEMBL
    A0A2R8RXS8, A0A8M2B5L7
    Related
    ENSDARP00000113920.1, ENSDART00000140805.3
    Conserved Domains (3) summary
    cd15884
    Location:177 → 235
    SNARE_SNAP23C; C-terminal SNARE motif of SNAP23
    cd15889
    Location:34 → 98
    SNARE_SNAP25N_23N; N-terminal SNARE motif of SNAP25 and SNAP23
    pfam00835
    Location:109 → 175
    SNAP-25; SNAP-25 family

  2. XM_017351605.2 → XP_017207094.1  synaptosomal-associated protein 23 isoform X1

    UniProtKB/TrEMBL
    A0A2R8RXS8, A0A8M2B5L7
    Conserved Domains (3) summary
    cd15884
    Location:177 → 235
    SNARE_SNAP23C; C-terminal SNARE motif of SNAP23
    cd15889
    Location:34 → 98
    SNARE_SNAP25N_23N; N-terminal SNARE motif of SNAP25 and SNAP23
    pfam00835
    Location:109 → 175
    SNAP-25; SNAP-25 family

  3. XM_005158727.3 → XP_005158784.1  synaptosomal-associated protein 23 isoform X2

    See identical proteins and their annotated locations for XP_005158784.1

    UniProtKB/TrEMBL
    A0A0R4IW20, A0A8N7XJG5, F6NZC2, Q7ZVE4
    Related
    ENSDARP00000141382.2, ENSDART00000169145.2
    Conserved Domains (3) summary
    cd15884
    Location:154 → 212
    SNARE_SNAP23C; C-terminal SNARE motif of SNAP23
    cd15889
    Location:11 → 75
    SNARE_SNAP25N_23N; N-terminal SNARE motif of SNAP25 and SNAP23
    pfam00835
    Location:86 → 152
    SNAP-25; SNAP-25 family

  4. XM_005158724.4 → XP_005158781.1  synaptosomal-associated protein 23 isoform X1

    See identical proteins and their annotated locations for XP_005158781.1

    UniProtKB/TrEMBL
    A0A2R8RXS8, A0A8M2B5L7
    Related
    ENSDARP00000155545.1, ENSDART00000183169.1
    Conserved Domains (3) summary
    cd15884
    Location:177 → 235
    SNARE_SNAP23C; C-terminal SNARE motif of SNAP23
    cd15889
    Location:34 → 98
    SNARE_SNAP25N_23N; N-terminal SNARE motif of SNAP25 and SNAP23
    pfam00835
    Location:109 → 175
    SNAP-25; SNAP-25 family

  5. XM_021467124.1 → XP_021322799.1  synaptosomal-associated protein 23 isoform X3

    UniProtKB/TrEMBL
    A0A8M9PE44
    Conserved Domains (3) summary
    cd15884
    Location:128 → 186
    SNARE_SNAP23C; C-terminal SNARE motif of SNAP23
    cd15889
    Location:1 → 49
    SNARE_SNAP25N_23N; N-terminal SNARE motif of SNAP25 and SNAP23
    pfam00835
    Location:60 → 126
    SNAP-25; SNAP-25 family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools