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KRT18P42 keratin 18 pseudogene 42 [ Homo sapiens (human) ]

Gene ID: 391819, updated on 12-Sep-2024

Summary

Official Symbol
KRT18P42provided by HGNC
Official Full Name
keratin 18 pseudogene 42provided by HGNC
Primary source
HGNC:HGNC:33412
See related
Ensembl:ENSG00000214794 AllianceGenome:HGNC:33412
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

Location:
5q21.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (109588289..109589655)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (110092790..110094156)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (108923990..108925356)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 6746 Neighboring gene praja ring finger ubiquitin ligase 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22879 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22880 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16224 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22881 Neighboring gene uncharacterized LOC105379117 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22882 Neighboring gene Sharpr-MPRA regulatory region 13215 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:108976475-108977048 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:109024284-109024952 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16225 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16226 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16227 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16228 Neighboring gene MAN2A1 divergent transcript Neighboring gene RN7SK pseudogene 230 Neighboring gene mannosidase alpha class 2A member 1

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_009708.2 

    Range
    101..1467
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    109588289..109589655
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    110092790..110094156
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)