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LOC390600 cytokine induced apoptosis inhibitor 1 pseudogene [ Homo sapiens (human) ]

Gene ID: 390600, updated on 17-Sep-2024

Summary

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Gene symbol
LOC390600
Gene description
cytokine induced apoptosis inhibitor 1 pseudogene
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC390600 in Genome Data Viewer
Location:
15q23
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (68833733..68835360)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (66656275..66657901)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (69126072..69127699)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene acidic nuclear phosphoprotein 32 family member A Neighboring gene ANP32A intronic transcript 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:69103956-69104456 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9651 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:69109604-69110186 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6590 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6591 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:69111351-69111932 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:69111933-69112514 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6593 Neighboring gene microRNA 4312 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6595 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6594 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:69115796-69116596 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9652 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9653 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:69167471-69168078 Neighboring gene MPRA-validated peak2374 silencer Neighboring gene SPESP1-NOX5 readthrough Neighboring gene sperm equatorial segment protein 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:69308141-69308642 Neighboring gene ATP binding cassette subfamily G member 2 (JR blood group) pseudogene Neighboring gene NADPH oxidase 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_008809.2 

    Range
    101..1728
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    68833733..68835360
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    66656275..66657901
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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