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OR52N4 olfactory receptor family 52 subfamily N member 4 [ Homo sapiens (human) ]

Gene ID: 390072, updated on 3-Apr-2024

Summary

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Official Symbol
OR52N4provided by HGNC
Official Full Name
olfactory receptor family 52 subfamily N member 4provided by HGNC
Primary source
HGNC:HGNC:15230
See related
Ensembl:ENSG00000181074 AllianceGenome:HGNC:15230
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
OR11-64
Summary
Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
Annotation information
Note: Genetic polymorphisms result in both protein coding and non-coding alleles of this gene.
Expression
Low expression observed in reference dataset See more
Orthologs
all
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Genomic context

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See OR52N4 in Genome Data Viewer
Location:
11p15.4
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (5726472..5755958)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (5784322..5813802)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (5775473..5777188)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene MED14-independent group 3 enhancer GRCh37_chr11:5711125-5712324 Neighboring gene uncharacterized LOC124902620 Neighboring gene tripartite motif containing 22 Neighboring gene olfactory receptor family 52 subfamily U member 1 pseudogene Neighboring gene MPRA-validated peak1182 silencer Neighboring gene olfactory receptor family 52 subfamily P member 1 (gene/pseudogene) Neighboring gene olfactory receptor family 56 subfamily B member 1 Neighboring gene olfactory receptor family 56 subfamily B member 2 pseudogene Neighboring gene olfactory receptor family 52 subfamily N member 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The human olfactory receptor gene family. Malnic B, et al. Proc Natl Acad Sci U S A, 2004 Feb 24. PMID 14983052, Free PMC Article
  2. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
  
enables olfactory receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
involved_in detection of chemical stimulus involved in sensory perception of smell IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
olfactory receptor 52N4
Names
olfactory receptor OR11-64

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001005175.5 → NP_001005175.3  olfactory receptor 52N4

    See identical proteins and their annotated locations for NP_001005175.3

    Status: VALIDATED

    Source sequence(s)
    AC131574
    Consensus CDS
    CCDS44528.1
    UniProtKB/Swiss-Prot
    B2RNP8, Q6IF77, Q8NGI2
    UniProtKB/TrEMBL
    A0A126GVF0
    Related
    ENSP00000493338.1, ENST00000641350.2
    Conserved Domains (2) summary
    pfam00001
    Location:43 → 295
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:33 → 311
    7tm_4; Olfactory receptor

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    5726472..5755958
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017017711.3 → XP_016873200.1  olfactory receptor 52N4 isoform X1

    UniProtKB/Swiss-Prot
    B2RNP8, Q6IF77, Q8NGI2
    UniProtKB/TrEMBL
    A0A126GVF0
    Conserved Domains (2) summary
    pfam00001
    Location:43 → 295
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:33 → 311
    7tm_4; Olfactory receptor

  2. XM_017017713.3 → XP_016873202.1  olfactory receptor 52N4 isoform X1

    UniProtKB/Swiss-Prot
    B2RNP8, Q6IF77, Q8NGI2
    UniProtKB/TrEMBL
    A0A126GVF0
    Conserved Domains (2) summary
    pfam00001
    Location:43 → 295
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:33 → 311
    7tm_4; Olfactory receptor

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    5784322..5813802
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054368738.1 → XP_054224713.1  olfactory receptor 52N4 isoform X1

  2. XM_054368739.1 → XP_054224714.1  olfactory receptor 52N4 isoform X1

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8NGI2.2 GenPept UniProtKB/Swiss-Prot:Q8NGI2

Gene LinkOut

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