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CG43078 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 38981, updated on 22-Aug-2024

Summary

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Official Symbol
CG43078provided by FlyBase
Primary source
FLYBASE:FBgn0262508
Locus tag
Dmel_CG43078
See related
AllianceGenome:FB:FBgn0262508
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG17926; CG32352; CG32353; CG32355; CG6239; Dmel\CG43078; lincRNA.473
Old locus tag
Dmel_CG32352; Dmel_CG32353; Dmel_CG32355
Summary
Is expressed in adult head; adult heart; and embryonic/larval muscle system. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See CG43078 in Genome Data Viewer
Location:
66D7-66D8; 3-26 cM
Exon count:
13
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (8576808..8599617)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (8569908..8592717)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene rhea Neighboring gene mir-190 stem loop Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Negative elongation factor E Neighboring gene Ribosomal protein L14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conservation of gene order, structure and sequence between three closely linked genes in Drosophila melanogaster and Drosophila virilis. Lyamouri M, et al. Gene, 2002 Jan 9. PMID 11814692
  2. Drosophila Ionotropic Receptor 25a mediates circadian clock resetting by temperature. Chen C, et al. Nature, 2015 Nov 26. PMID 26580016
  3. In Depth Exploration of the Alternative Proteome of Drosophila melanogaster. Fabre B, et al. Front Cell Dev Biol, 2022. PMID 35721519, Free PMC Article
  4. Editor's Highlight: Genetic Targets of Acute Toluene Inhalation in Drosophila melanogaster. Bushnell PJ, et al. Toxicol Sci, 2017 Mar 1. PMID 28013218, Free PMC Article
  5. Unraveling the Genetic Basis for the Rapid Diversification of Male Genitalia between Drosophila Species. Hagen JFD, et al. Mol Biol Evol, 2021 Jan 23. PMID 32931587, Free PMC Article

See all (29) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein
Names
CG43078-PA
CG43078-PB
CG43078-PC
CG43078-PD
CG43078-PE
CG43078-PG
CG43078-PH
CG43078-PI
CG43078-PJ
CG43078-PK
CG43078-PL
CG43078-PM
CG43078-PN

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    8576808..8599617
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001300057.1 → NP_001286986.1  uncharacterized protein Dmel_CG43078, isoform N [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001286986.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    M9NF47

  2. NM_001274661.1 → NP_001261590.1  uncharacterized protein Dmel_CG43078, isoform K [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001261590.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    M9PET1

  3. NM_001259751.1 → NP_001246680.1  uncharacterized protein Dmel_CG43078, isoform J [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001246680.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    M9NF47

  4. NM_001259749.1 → NP_001246678.1  uncharacterized protein Dmel_CG43078, isoform H [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001246678.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    M9NFP8

  5. NM_001274662.1 → NP_001261591.1  uncharacterized protein Dmel_CG43078, isoform L [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001261591.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    M9PHT9

  6. NM_001274663.1 → NP_001261592.1  uncharacterized protein Dmel_CG43078, isoform M [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001261592.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    M9PBX1

  7. NM_001169908.2 → NP_001163379.1  uncharacterized protein Dmel_CG43078, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001163379.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q5BHY8
    Conserved Domains (1) summary
    PTZ00341
    Location:637 → 753
    PTZ00341; Ring-infected erythrocyte surface antigen; Provisional

  8. NM_001169909.1 → NP_001163380.1  uncharacterized protein Dmel_CG43078, isoform E [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001163380.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    E1JI71, Q7YTY0

  9. NM_168278.3 → NP_729389.1  uncharacterized protein Dmel_CG43078, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_729389.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7YTY0, Q9VSM0
    Related
    FBpp0293349

  10. NM_168279.3 → NP_729390.1  uncharacterized protein Dmel_CG43078, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_729390.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7YTY0, Q9VSM1
    Related
    FBpp0293347

  11. NM_001259750.1 → NP_001246679.1  uncharacterized protein Dmel_CG43078, isoform I [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001246679.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    M9ND64

  12. NM_170629.3 → NP_729391.1  uncharacterized protein Dmel_CG43078, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_729391.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VSM2
    Related
    FBpp0293348
    Conserved Domains (1) summary
    PTZ00341
    Location:54 → 170
    PTZ00341; Ring-infected erythrocyte surface antigen; Provisional

  13. NM_001259748.2 → NP_001246677.1  uncharacterized protein Dmel_CG43078, isoform G [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001246677.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    M9NE59
    Conserved Domains (1) summary
    PHA03247
    Location:436 → 613
    PHA03247; large tegument protein UL36; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
E1JI71 E1JI71
M9ND64 M9ND64
M9NE59 M9NE59
M9NF47 M9NF47
M9NFP8 M9NFP8
M9PBX1 M9PBX1
M9PET1 M9PET1
M9PHT9 M9PHT9
Q5BHY8 Q5BHY8
Q7YTY0 Q7YTY0
Q8MZ46 Q8MZ46
Q95RZ5 Q95RZ5
Q9VSM0 Q9VSM0
Q9VSM1 Q9VSM1
Q9VSM2 Q9VSM2

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