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LOC389602 uncharacterized LOC389602 [ Homo sapiens (human) ]

Gene ID: 389602, updated on 5-Mar-2024

Summary

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Gene symbol
LOC389602
Gene description
uncharacterized LOC389602
See related
Ensembl:ENSG00000204876
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in duodenum (RPKM 10.6), small intestine (RPKM 9.8) and 5 other tissues See more
Orthologs
all
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Genomic context

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Location:
7q36.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (155961341..155968962)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (157148350..157155968)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (155754035..155761656)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:155597860-155598829 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:155598830-155599798 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:155607457-155608100 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:155608399-155608900 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:155628074-155629066 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:155632935-155634134 Neighboring gene sonic hedgehog signaling molecule Neighboring gene ReSE screen-validated silencer GRCh37_chr7:155638472-155638619 Neighboring gene MPRA-validated peak6864 silencer Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:155661375-155662574 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26904 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:155678617-155679816 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:155743904-155745103 Neighboring gene uncharacterized LOC124901788 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:155745489-155745989 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:155747182-155747910 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:155754590-155755789 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:155766793-155767294 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:155767295-155767794 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26905 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:155790505-155791005 Neighboring gene uncharacterized LOC105375597 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:155815211-155815389 Neighboring gene uncharacterized LOC124901789 Neighboring gene MPRA-validated peak6866 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26906 Neighboring gene SHH silencer LOC106049962 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:155855824-155857023 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:155857309-155858508 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:155884497-155884996 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:155898353-155899150 Neighboring gene uncharacterized LOC105375603 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:155936145-155936722

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Human chromosome 7: DNA sequence and biology. Scherer SW, et al. Science, 2003 May 2. PMID 12690205, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Homology

Clone Names

  • FLJ42330, AC021218.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_144629.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC021218
    Related
    ENST00000683260.1

  2. NR_168378.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC021218

  3. NR_168379.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC021218

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    155961341..155968962
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    157148350..157155968
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001291913.2: Suppressed sequence

    Description
    NM_001291913.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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