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LOC388996 otopetrin 1 pseudogene [ Homo sapiens (human) ]

Gene ID: 388996, updated on 17-Sep-2024

Summary

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Gene symbol
LOC388996
Gene description
otopetrin 1 pseudogene
See related
Ensembl:ENSG00000278131
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC388996 in Genome Data Viewer
Location:
2p11.2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (91589429..91621501)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (91779194..91811217)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (91777471..91809527)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101927984 Neighboring gene MAPK-interacting and spindle-stabilizing protein-like Neighboring gene OCT4 hESC enhancer GRCh37_chr2:91744009-91744510 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:91762682-91763600 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:91763601-91764518 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:91782891-91783056 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:91800405-91800908 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:91814909-91815410 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:91815411-91815910 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:91815988-91816557 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:91820030-91820530 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:91820531-91821031 Neighboring gene LSP1 pseudogene 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:91846385-91847216 Neighboring gene RNA, 5S ribosomal pseudogene 100

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_021568.4 

    Range
    101..32173
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    91589429..91621501
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    91779194..91811217
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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