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LINC01913 long intergenic non-protein coding RNA 1913 [ Homo sapiens (human) ]

Gene ID: 388942, updated on 10-Oct-2023

Summary

Official Symbol
LINC01913provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1913provided by HGNC
Primary source
HGNC:HGNC:52732
See related
Ensembl:ENSG00000214691 AllianceGenome:HGNC:52732
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
2p21
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (41877555..41894046)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (41883041..41899531)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (42104695..42121186)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ribosomal protein S12 pseudogene 4 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11389 Neighboring gene RNA, U4 small nuclear 63, pseudogene Neighboring gene MPRA-validated peak3674 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15625 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11390 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:42157683-42158882 Neighboring gene long intergenic non-protein coding RNA 1914 Neighboring gene uncharacterized LOC124905996 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:42164451-42165045 Neighboring gene Sharpr-MPRA regulatory region 382 Neighboring gene long intergenic non-protein coding RNA 2898 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:42166828-42167422 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:42175498-42176148

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033996.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AK126414, CR627372
    Related
    ENST00000398796.4

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    41877555..41894046
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    41883041..41899531
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)