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TEX36 testis expressed 36 [ Homo sapiens (human) ]

Gene ID: 387718, updated on 10-Oct-2024

Summary

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Official Symbol
TEX36provided by HGNC
Official Full Name
testis expressed 36provided by HGNC
Primary source
HGNC:HGNC:31653
See related
Ensembl:ENSG00000175018 AllianceGenome:HGNC:31653
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C10orf122; bA383C5.1
Expression
Restricted expression toward testis (RPKM 3.8) See more
Orthologs
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Genomic context

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See TEX36 in Genome Data Viewer
Location:
10q26.13
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (125576522..125683163, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (126458967..126565578, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (127265091..127371732, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378545 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:127233771-127234271 Neighboring gene uncharacterized LOC124902522 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:127262217-127263416 Neighboring gene TEX36 antisense RNA 1 Neighboring gene uncharacterized LOC102724793 Neighboring gene NANOG hESC enhancer GRCh37_chr10:127273327-127273841 Neighboring gene Sharpr-MPRA regulatory region 5499 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:127350251-127351450 Neighboring gene ALDOA pseudogene 2 Neighboring gene uncharacterized LOC283038 Neighboring gene EDRF1 divergent transcript Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4193 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4194 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:127408179-127409161 Neighboring gene erythroid differentiation regulatory factor 1 Neighboring gene EDRF1 antisense RNA 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease. Chalasani N, et al. Gastroenterology, 2010 Nov. PMID 20708005, Free PMC Article
  2. Identification of the human testis protein phosphatase 1 interactome. Fardilha M, et al. Biochem Pharmacol, 2011 Nov 15. PMID 21382349
  3. The DNA sequence and comparative analysis of human chromosome 10. Deloukas P, et al. Nature, 2004 May 27. PMID 15164054
  4. Proteomic analyses reveal distinct chromatin-associated and soluble transcription factor complexes. Li X, et al. Mol Syst Biol, 2015 Jan 21. PMID 25609649, Free PMC Article
  5. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. Rose JE, et al. Mol Med, 2010 Jul-Aug. PMID 20379614, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Clinical trial of gene-disease association and gene-environment interaction. (HuGE Navigator)
    Title: Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • FLJ27500, MGC157877, MGC157878

General protein information

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Preferred Names
testis-expressed protein 36
Names
testis-expressed sequence 36 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001128202.3 → NP_001121674.1  testis-expressed protein 36 isoform a

    See identical proteins and their annotated locations for NP_001121674.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).
    Source sequence(s)
    AA977508, AL158835, BC062717
    Consensus CDS
    CCDS44493.1
    UniProtKB/Swiss-Prot
    Q0P5T8, Q5VZQ5
    Related
    ENSP00000357811.3, ENST00000368821.4
    Conserved Domains (1) summary
    pfam15115
    Location:1 → 175
    HDNR; Domain of unknown function with conserved HDNR motif

  2. NM_001318133.2 → NP_001305062.1  testis-expressed protein 36 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate 3' terminal exon, and it thus differs in the 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (b) has a distinct C-terminus and is shorter than isoform a.
    Source sequence(s)
    AL158835, AL805915, BC062717, BC127767, BX336391, BX390366
    Consensus CDS
    CCDS81521.1
    UniProtKB/TrEMBL
    A0PJZ8, E9PJL2
    Related
    ENSP00000431764.1, ENST00000532135.5
    Conserved Domains (1) summary
    pfam15115
    Location:1 → 88
    HDNR; Domain of unknown function with conserved HDNR motif

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    125576522..125683163 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005269817.5 → XP_005269874.1  testis-expressed protein 36 isoform X1

    UniProtKB/TrEMBL
    E9PR91
    Conserved Domains (1) summary
    pfam15115
    Location:1 → 90
    HDNR; Domain of unknown function with conserved HDNR motif

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    126458967..126565578 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054365903.1 → XP_054221878.1  testis-expressed protein 36 isoform X1

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5VZQ5.1 GenPept UniProtKB/Swiss-Prot:Q5VZQ5

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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Chemical Information
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