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neg-1 glycosyl hydrolase family 30-1 [ Neurospora crassa OR74A ]

Gene ID: 3873626, updated on 6-Jun-2024

Summary

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Gene symbol
neg-1
Gene description
glycosyl hydrolase family 30-1
Locus tag
NCU04395
See related
FungiDB:NCU04395; VEuPathDB:NCU04395
Gene type
protein coding
RNA name
endo-1,6-beta-D-glucanase
RefSeq status
PROVISIONAL
Organism
Neurospora crassa OR74A (strain: OR74A)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora
Also known as
gh30-1
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Genomic context

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See neg-1 in Genome Data Viewer
Location:
other: IV
Exon count:
1
Sequence:
Chromosome: IV; NC_026504.1 (3501796..3503512, complement)

Linkage Group IV - NC_026504.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene 3-hydroxyacyl-CoA dehydrogenase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026504.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of the filamentous fungus Neurospora crassa. Galagan JE, et al. Nature, 2003 Apr 24. PMID 12712197
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucosylceramidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucosylceramide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
endo-1,6-beta-D-glucanase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_026504.1 Reference assembly

    Range
    3501796..3503512 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_952379.2 → XP_957472.1  endo-1,6-beta-D-glucanase [Neurospora crassa OR74A]

    See identical proteins and their annotated locations for XP_957472.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q7M4T0, Q7RZ78, Q8NKJ2
    Conserved Domains (1) summary
    cl23815
    Location:12 → 444
    Glyco_hydro_30; O-Glycosyl hydrolase family 30
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7M4T0.2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials